KEGG   Rattus norvegicus (rat): 294287
Entry
294287            CDS       T01003                                 
Symbol
Phf1
Name
(RefSeq) PHD finger protein 1
  KO
K11467  PHD finger protein 1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    294287 (Phf1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    294287 (Phf1)
   03036 Chromosome and associated proteins [BR:rno03036]
    294287 (Phf1)
Transcription factors [BR:rno03000]
 Eukaryotic type
  Zinc finger
   Other zinc fingers
    294287 (Phf1)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     294287 (Phf1)
SSDB
Motif
Pfam: Tudor_2 PHD Mtf2_C ASH2L-like_WH PHD_2 Chromo DUF4537
Other DBs
NCBI-GeneID: 294287
NCBI-ProteinID: NP_001401671
RGD: 1303205
Ensembl: ENSRNOG00000000480
Vega: OTTRNOG00000001953
Position
20:5019650..5024732
AA seq 560 aa
MAQLPRLSRLGAPSLWDPASPAPTSGPRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREV
CLVQFEDDSQFLVLWKDISPAALPGEELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHV
PRAPAPGEGEGSSWVCRQCVFAIATKRGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGH
LSNRQQSYCYCGGPGEWNLKMLQCRSCLQWFHEACTQCLSKPLLYGDRFYEFECCVCRGG
PEKVRRLQLRWVDVAHLVLYHLSVCCKKKYFDFDREILPFTSENWDSLLLGELSDTPKGE
RSSKLLSALNSHKDRFISGREIKKRKCLFGLHARTPPPVELLTGDGSPTSFPSGQGPGGG
VSRPLGKRRKSEPEPLRRRQKGKVEELGPPTAAHSRHGSQEQRALQASESPPPPSPNQSY
QGSSGYNFRPTDARCLPSSPIRMFASFHPSASTAGTSGDSEPPDRSPLELHIGFPTDIPK
SSPHSVTASSSSVPALTPGLSRHSLPPSPLCRSLSPGTGGGVRGGVSYLSRGDPVRVLAR
RVRPDGSVQYLVEWGGGGIF
NT seq 1683 nt   +upstreamnt  +downstreamnt
atggcgcagctcccccggctgagccgtttgggtgctccctctctttgggacccagcctcc
cctgctcccacctcaggccccagacctcggctttgggaaggtcaagatgtgctggcaaga
tggactgatgggctcctgtacttgggcaccatcaaaaaggtggacagtgcgcgggaggtg
tgtctggtccagtttgaggatgattcccagtttctagttctatggaaggacatcagccca
gccgcccttcctggtgaggagctcctctgttgtgtgtgtcgctctgagaccgtggtccct
gggaaccggctggtcagctgtgagaagtgtcgccatgcctatcaccaggactgtcacgtc
cccagggccccagcccctggagaaggagagggcagctcctgggtctgccgccagtgtgtc
tttgcgattgccacaaagaggggaggtgccctgaagaagggtccctatgcccgggccatg
ctgggcatgaaactctccctgccgtacggtctgaaagggctggactgggacgccggacat
ctgagcaacaggcagcagagctactgttactgcgggggcccgggggagtggaacctgaaa
atgctgcaatgccggagctgcctccagtggttccatgaggcctgcacccagtgtctgagc
aagcccctcctttacggagacagattctatgaatttgaatgctgtgtgtgccggggcggc
cctgagaaagtacggaggttacagcttcgctgggtggatgtggcccatcttgttctctac
catctcagcgtttgctgtaagaagaaatatttcgattttgaccgagagatcctccccttc
acctctgagaattgggacagtctgctcctgggggagctttcagacactcccaaaggagaa
cgctcttccaagctcctttctgcccttaacagccacaaggaccgtttcatttcagggagg
gagattaaaaagaggaaatgcctttttggtctccatgctcggacccctcctcctgtggag
cttctcactggagatggatcccccaccagcttcccttcagggcagggccctgggggaggg
gtctcacgtcccctggggaaacgccggaagtcggagccagaacccttgaggaggaggcag
aaggggaaagtggaggaactggggccacccacagcagctcacagtcggcatgggtcccag
gagcagagggccctgcaggcctcagagtctccaccaccccccagccctaaccagagctac
cagggcagcagcggctacaacttccggcccacagacgcccgctgtctgcccagcagcccc
atccggatgttcgcctccttccacccttctgccagcactgcagggacctctggggacagt
gaacccccagacaggtcacctctggaacttcacattggcttccccacagacatccctaaa
agttctccccactcagtgactgcctcgtcttcctcggtcccagccctgaccccaggcctt
tctagacattcactgcccccttctcccttgtgccgtagtttgtctccggggactggggga
ggagtccgaggtggggttagctacctgtcccggggtgaccctgtcagggtccttgctcga
agagtgcggcctgatggctctgtgcagtacctagtcgagtggggaggagggggcatcttc
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (10)   
   UniProt (1)   
   RefSeq(pep) (9)   
DNA sequence (14)   
   RefSeq(nuc) (12)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (43)   

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