KEGG   Rattus norvegicus (rat): 294595
Entry
294595            CDS       T01003                                 
Symbol
Skic3
Name
(RefSeq) tetratricopeptide repeat protein 37
  KO
K12600  superkiller protein 3
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    294595 (Skic3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    294595 (Skic3)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     294595 (Skic3)
SSDB
Motif
Pfam: TPR_1 TPR_2 TPR_19 TPR_16 TPR_14 TPR_8 TPR_11 TPR_17 TPR_12 TPR_7 TPR_9 ANAPC3 Sel1 TPR_6 TPR_15 Coatomer_E BTAD Retrotran_gag_2 TPR_20
Other DBs
NCBI-GeneID: 294595
NCBI-ProteinID: NP_001414001
RGD: 1306062
Ensembl: ENSRNOG00000040297
Position
2:7363417..7526351
AA seq 1563 aa
MSSKEVKTALKSARDAIRNKEYKEVLKHCKTVLKQEKDNYNAWVFIGVAAAELGQPDQAQ
GAYKKAAELEPEQLLAWQGLASLYEKCNHINAKDDLPGVYRKLLDLYESVDKQKWCDVCK
KLVDLYHQEKKHLEVARTWYRLIKARQEDGADRQELYELWRKLSQLLSEDAEDQNDETQQ
MLLTAFENALDLADNVPSEDHQVLYRNFIQYLSKFPHEMTRLKKACEGMITMYPAVQYPL
EVICLYLIDSGSLTDEGHQYCYKLVEMNSKSGPGLIGLGIRALQDKKYEDAISHLTEGLK
ESPLCIAGWCHLAEVQVKVHRPKEAILSCNRALKTIDNLGASGGSLHQKNLCLRLKAEAL
LKLSDCASLEEAVHILDQLSDTDNTPGLLVLQGLACLNTGAIDKATKIMEDLVASYPDLS
EAHALEAYVHFTKKDYVQAETSFQRALEKDAEVAEYHYQLGLTYWLMGEETRKDRTKALN
HFLKAARLDAHMGKVFCYLGHYYRDVAGDRNRARGCYRKAFELDDSDAESGAAAVDLSVE
LEDTETALAILTAVTQKASSGAAKWAWLRRGLYYLKAGHHSQAVADLQAALRADPKDCNC
WESLGEAYLSRGSYTTALKSFTRASELSPDSTYSVFKVAAIQQILGRYSEAIAQYQLIIK
KEEDYVPALKGLGECHLMLGKAALVDFLDGKAVDYVEQALGYFTRALQHRADVSCLWKLM
GDACTCLHPVSPAKVNVRVSGALLGQQEGQEVLRKDELLHLGGRCYGRALKLMSTSNTWC
DLGINYYRQAQHLAETGSSMNDLTELLEKSLHCLKKAVRLDSNNHLYWNALGVVTCYHGV
GNYALAQHCFIKSIQAEQINAAAWTNLGVLYLATENIEQAHEAFQMAQSLDPSYLLCWIG
QALIAERIGSYETMDLFRHTTELSMHTEGAIGYAYWVCTTLQDKSNRETELYQYNILQMN
AVPAAQGVLCKYVERIQNYAPAFTMLGYLNEHLQLKREAAEAYQRATALLHSAEDQHTYN
VTVRNWGRLLCSIGDYDKALQAFKSTPLAELEDIIGFALALFMKGLYKESSTAYERALTV
CKSEQDKAHILTAMAVTEYKQGKMDAAKSLLFKCSILKEPTAESLQVLCALGLAMQDATL
SKAALNELLKHIKQKNDYHRYLLTSAIYALQGHSVAVQRQVAKAVHSNPADPALWSLLSR
IVAQYTQQNAKGGAVAGSVAHILDSNHGKKALLYTAVNQLAMGGSTAEDKSSTALKTIQK
AAFLSPDDPAVWAGLMAACHADDKLALVSNTQPKRVDLYLALQSAVSASLKDKENLQNYN
LLLEKWSFSQAVTGLIDTGKISEAESLCTKNLKSNPDQPAVILLLRQVQCTSLLASQKPL
PDAVLEELQKTVMSNSTSVPAWQWLAQVYQSQGMMSAAEMCYRKSLQVASQQGSWSGKLS
SLLKLALLALEVCMANVSGDHWSSLVQEATSEALKVCFSPLAIFLQALLQFNRKMGARET
RRLLERVVYQTGYPNSIVSTARWYLLRHLHAKDDHELIDVLVRNAETHGDKRMLELNRKL
SAQ
NT seq 4692 nt   +upstreamnt  +downstreamnt
atgtccagcaaagaagtgaaaactgctctaaaaagtgcaagagatgcaatcagaaacaag
gagtacaaagaagttttgaaacattgcaagacagtgttaaaacaagagaaagataactat
aatgcctgggtttttattggtgttgctgcagctgaacttggacagcctgatcaggctcag
ggcgcctataagaaagccgctgaactagagccagagcagctccttgcttggcagggtcta
gcaagtttgtatgagaagtgtaatcacataaatgctaaagatgatttacctggtgtatac
cgaaagctattggatctctatgaaagtgttgacaaacagaagtggtgtgacgtgtgtaag
aaacttgtggatctctatcaccaggagaagaaacacctagaggtggctcggacatggtat
agactgataaaggcgcgtcaggaggatggggcagaccgacaagagctttatgagctgtgg
agaaagctgagtcagttgctctctgaggatgcagaagatcagaatgatgagacccagcag
atgcttttaactgcatttgagaatgcactggacttagcagataacgttcccagtgaagat
caccaagtactttataggaatttcattcagtatttgtctaaatttcctcatgagatgact
aggttgaagaaggcctgtgaaggaatgataactatgtatcctgctgtacagtacccactg
gaagtgatttgtttgtacctaattgactcagggagcctgacagatgagggacaccagtat
tgttataagctagtggaaatgaattcaaaaagtggtccaggccttattggcttaggtatt
agagctttacaagacaagaagtatgaagatgctatcagtcatctaacagaaggcttgaag
gaaagccctctctgcatagctgggtggtgtcatctagcagaagtccaagtcaaagtgcac
agacctaaggaagctattctttcttgcaatcgagctctgaagaccatagataacctcggt
gcgtcaggtggcagtcttcatcagaagaatctttgtcttcgtctgaaagcagaggctttg
cttaaactctcagactgtgcatcgttggaggaggcagtgcatatccttgatcagctttct
gacacagataataccccgggactgctggttctccaaggcctggcctgtctgaatacaggt
gctatagacaaagctacaaagatcatggaagaccttgtagcctcttaccctgatctgtct
gaagctcacgctcttgaagcttatgttcattttactaagaaggactatgtgcaagcagaa
acgagtttccagagagcactggagaaagatgctgaagttgctgaatatcattaccagctt
gggttgacatactggctcatgggtgaagaaacaagaaaagacagaacaaaggctcttaac
cactttctgaaggccgcaagactggatgcacacatgggtaaagttttctgctacctaggc
cattattaccgagatgtggctggcgatagaaatagagcccgaggctgttacaggaaagca
tttgaattagatgacagcgatgctgagtctggagctgctgcagttgacctgagcgtagag
cttgaagacacggaaactgcattagcgatcttgacagcagtaacccaaaaggcaagctca
ggagcagcgaagtgggcgtggctgagacgaggcctatactatttgaaagctggtcaccat
tctcaagcagtggctgatttacaggcagcattaagggcggaccccaaggactgcaattgt
tgggagtcattaggagaggcatacttaagcaggggtagctacacaacggccttgaagtcc
ttcacaagagccagtgagctcagccctgactccacatacagtgtgtttaaagtggcagcc
attcagcaaatcctaggcaggtattcggaagccattgcacagtatcagctgatcattaaa
aaggaggaagattatgtgcctgccttaaaaggtttgggtgagtgccacctgatgctgggg
aaggcggccttagtggattttctggacgggaaagctgtggactatgtggagcaagctctg
ggatatttcacccgggccctacagcatcgagctgatgtgtcttgtctttggaagctcatg
ggggatgcatgcacttgtctgcaccccgtttcaccagctaaagtgaatgttcgtgtctca
ggagcccttctcggccagcaagaaggacaagaagtcttacggaaagatgagctcctgcat
cttggaggaaggtgttatggtcgtgcattaaaattgatgtctacatctaatacatggtgt
gatcttggaattaattattaccgtcaagcacagcatctagcagaaacaggcagcagcatg
aatgatcttactgagttactggagaaatctttgcattgtctgaaaaaggcagtgaggctg
gacagtaataatcacttatactggaacgctcttggtgtggttacatgttaccatggagtt
ggaaattatgcccttgctcagcactgtttcatcaaatcaatccaggcagaacaaattaac
gctgctgcatggaccaacttaggagtgttataccttgcgactgaaaacattgagcaagcc
catgaagcgttccaaatggctcagtcccttgatccatcttatttattgtgctggattgga
caggctcttattgcagagagaattggaagttatgaaacaatggatctctttaggcatacc
acagagctcagtatgcatactgaaggagcaataggttatgcgtattgggtttgtacaaca
ttacaagacaaaagcaacagagaaacagagctatatcagtacaacatcctccagatgaat
gctgtccctgcagcacagggcgttctctgtaaatatgtagaaagaattcagaattacgct
ccagcgttcacaatgttgggttatttaaacgagcatctgcagttgaaaagggaagcagct
gaggcataccaaagggcaactgcactgttacattctgcagaagaccaacatacttacaat
gttacagtaagaaactggggcagattgttgtgctccattggtgactatgacaaagctctc
caggcctttaagtcaacgccccttgcagagttggaggacatcataggctttgcactggca
ttgtttatgaagggcctgtataaggagagcagcacagcctatgagagagccttgactgtt
tgtaaatcagagcaagacaaagctcacatcttgacagctatggcagtaacagaatataaa
caaggaaaaatggatgcagccaagtcattactcttcaaatgctctatattaaaggaacca
actgcagaaagcctccaagtactatgtgctctagggctggcaatgcaggatgctacactg
tcaaaagcagcacttaacgagttactgaagcatatcaaacagaaaaatgattatcacagg
taccttcttacctcagcaatttacgcactccagggccacagtgtggcagtgcaaagacaa
gtggccaaggctgtgcacagtaatcctgctgacccagccctttggtctttgctgtctcga
attgttgctcagtacacccagcagaatgcaaagggtggtgctgttgctggcagtgtggct
catattctggattcgaatcatggaaagaaggctttattgtacactgcagtgaaccagttg
gccatgggaggcagtacagcagaagacaaaagcagcactgctctaaagaccattcagaag
gcagccttcctttctccagatgatcctgctgtctgggctggcttgatggcagcctgccat
gcagatgataaactggctttggtcagtaacactcagccaaagagggtagatttatacttg
gcattgcagtctgctgtttctgcttcacttaaggacaaagaaaatttgcaaaattacaac
ctgttgcttgaaaagtggtctttttcacaagctgtcactggtctgattgacacaggaaaa
atatctgaagccgaatctctgtgcacaaagaatttaaaaagcaaccccgatcagccagct
gttatcttactgttgagacaagttcagtgtacatcactcctggcgtcacagaaacccctc
ccagatgctgtactggaagaactgcaaaaaacagtcatgtccaactcaacctctgttcca
gcatggcagtggttggcacaggtgtatcagtcccaaggaatgatgagtgccgcagagatg
tgttatagaaagagtctccaagtggcatcccagcagggcagctggagtgggaagctctcg
agcctgctgaagctagcccttcttgcactggaagtgtgcatggctaatgtttcaggtgat
cactggtcatccttggttcaagaagccacaagtgaggccttgaaggtttgctttagtccg
ctggctatcttcttgcaagcgttgttacagttcaaccgtaagatgggagcaagagagaca
cggcgactgttggagagagtggtgtatcagactggataccccaactcaattgtatcaact
gctcgttggtacctcttaagacacctccatgcgaaagatgaccatgagctaattgatgtt
ttggtgaggaatgccgagacccacggtgataaaagaatgttggaactgaatcggaagctg
tcggcccaataa

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