KEGG   Rattus norvegicus (rat): 294601
Entry
294601            CDS       T01003                                 
Symbol
Slf1
Name
(RefSeq) SMC5-SMC6 complex localization factor protein 1
  KO
K26126  SMC5-SMC6 complex localization factor protein 1
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rno03400]
    294601 (Slf1)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    SMC5-SMC6 complex
     294601 (Slf1)
SSDB
Motif
Pfam: Ank_2 Ank Ank_5 Ank_3 Ank_4 RTT107_BRCT_5
Other DBs
NCBI-GeneID: 294601
NCBI-ProteinID: NP_001099870
RGD: 1304857
Ensembl: ENSRNOG00000040279
UniProt: A6I4G9
Position
2:complement(8498776..8606251)
AA seq 1059 aa
MEGGATKHVIQMTGFKMEEKEALVKLLLKLDCTFIKSEKYKNCTHLIAERLCKSEKFLAA
CAAGKWVLTKDYIIHSAKSGRWLDETTYEWGYKIEKDSHYSPQMQSAPKRWREELKRTGA
PGAFHRWKVVLLVRADKRSDSLVRVLEAGKANVILPRSSPSGITHVIASNARISAEREQE
NFKAPFYPIQYLGDFLLEKEIQNDEDSQISSGRTKYNSQEKSKDFKRDMGFLEMKGAGEN
MYRTQNKMGNHNENVNDKFVLSEHHKKKFRDFRKDMKSIKKTNTFRRRAHENQKETKKKD
KNVQRSYILRKKNIKEGYCKTDDAHDTTRSTLKKRWSYRDQKEMKNSLLTDCAKESETKD
VKANVDLTEVKNALKRQIHRDIYRAQAVRYNCIRVDKQPVYNVEVKNAEFPRGILNLIES
LIEGQFFKEAIEELSSLQAHYVPPVCLLHALLENVLQDNIDTFSGRYFHILSALLHLHPP
WKSPAMSRYYLELFQCPTCMKGAWPLVEMLVRSCLFNEGFCHQISENIGSKVAHLTLLKF
FFNLLESEVRHLSQKLCDWSDSQNLKVAEKAILHEIFWSGSETSGLLTKPVNMLLEWTIY
SHKEKCKSNDVFKHELSYLLTGILGTAVDYWIFLGIQMGRNVIRHMSEDLGSYISLSCDD
FSSKELELFICSFSSSWLQMFVAEAIFKKLCLQGPTSTCTEPLSLQKIIDSYLPVLGKMD
IHGAGKMQMPKKLCQRPCLESQRALLMLNGAKQKQADGRPEFLELNHAKCSSSLKKLKKK
SEGESSCSKENCPSLVTKMNFHKTNLKGETALHRVCIKNQVEKLIILLSLPGIDINVKDN
AGWTPLHEACNYGNTVCVREILQRCPEVDLLTQVDGVTPLHDALSNGHVEIGKLLLQHGG
PELLQQRNSKGELPLDYVLSPKDKEELFAITNIDDTVDNFHAKTQKHFYHEQLEFGSFLL
SRMLISFCSIFDLSSEFILAFKGLSHLNELLMACNTDTEPTSAHSDWLLDLYTRNIKTLK
KLPSVLKELPENLNVCPGVHTEALLVTLEMMCQSITEVS
NT seq 3180 nt   +upstreamnt  +downstreamnt
atggaaggtggtgccaccaaacatgtcatccagatgacagggtttaagatggaggagaag
gaagctctagtcaagttgcttttaaagctagattgcacttttataaagagtgagaaatat
aaaaactgtacacatcttatagctgaacgcctgtgcaagagtgagaagtttttagcagct
tgtgctgcaggaaaatgggtattaacaaaggattacataattcatagtgccaaaagtggc
agatggcttgatgaaacaacttatgaatggggatataaaattgaaaaagattcccattat
tcacctcaaatgcaatctgcaccgaaaagatggcgtgaagagctgaaacggactggtgct
cctggagccttccacagatggaaagttgttctccttgttagggcagataagcggagtgac
tctcttgtaagagttttggaagctggaaaggcaaatgtcattttaccaagaagttctcct
agtggtataacccatgtgattgccagtaatgcaagaatcagtgctgagagagaacaagaa
aactttaaggctccgttttatccaattcagtatttaggggattttctcttagagaaagaa
attcagaatgatgaagattcccaaatcagttctggtcggaccaaatataacagtcaagaa
aaaagcaaagattttaagagagacatgggatttcttgaaatgaaaggtgctggagaaaac
atgtacagaactcagaataaaatgggaaatcataatgaaaatgttaatgataagtttgtt
ctgagtgaacatcacaaaaagaaattcagagacttcagaaaagatatgaaatctattaaa
aaaacaaatacattcagaagacgtgcacatgagaatcagaaagaaactaagaaaaaagat
aaaaatgtccaaaggagttacattttaaggaaaaagaacataaaagaaggttattgcaaa
actgacgatgcccatgacacaactagaagtacattaaaaaagcgctggagctacagagac
cagaaagaaatgaagaattctcttcttactgattgtgccaaagaatcagagaccaaggat
gtcaaggcaaatgtggatctcacggaagtaaaaaatgccttaaagaggcagatacacaga
gacatatatagagctcaggcagtccgatacaactgcattagagtagataaacagccggta
tacaatgtagaggttaaaaatgcagagttccccagaggaatattaaatttaattgaaagc
ctcatagagggacagttctttaaagaagccattgaagagctttcctctttgcaagcccat
tatgtccctccagtgtgccttctacatgccctactagagaatgttctgcaggataatata
gatacattttctggtcgatactttcatatattatcagctcttcttcatctgcatcctcct
tggaagtcaccagccatgtcaagatactacttagagctatttcagtgtccaacttgtatg
aaaggagcctggcctctcgtggagatgctcgtcaggtcttgtcttttcaatgaaggtttc
tgccatcaaatatcagaaaacattggttctaaagtggcccatcttacactgctcaagttc
ttctttaacctacttgaaagtgaagtgcggcatttgagtcaaaagttatgtgactggtca
gattctcagaatctaaaagtagcagaaaaggcaattcttcatgaaattttttggtcagga
agtgaaacttcaggacttttgacaaaaccagtaaatatgcttttggaatggactatttat
tctcacaaggaaaaatgcaagtctaatgatgtcttcaaacatgaactatcttacttactg
actggaattcttggcacagcagtagactattggatcttccttggtattcagatgggtaga
aatgtgatccgacacatgtctgaggacttaggaagctatatttccctttcctgtgatgac
ttttcttcaaaagaactagagctcttcatttgttccttttcatcttcctggcttcaaatg
ttcgttgcagaagcaatctttaaaaagctgtgcttacagggccccactagtacgtgcact
gagccactctctcttcagaaaataatagattcctatttaccagttttggggaaaatggac
atacatggggctggaaagatgcagatgccaaaaaaactctgccagcggccttgcctagag
tctcaaagagcgttactaatgctgaacggtgcaaaacagaaacaagcagacggtcggcca
gagttccttgagttaaaccatgctaaatgttcctcatcgttgaaaaagctgaagaagaag
tcagaaggagaatcgtcatgttcgaaggagaattgcccctctttggttacaaagatgaat
tttcataaaactaatctgaaaggggaaacagctctgcatagagtttgcataaaaaaccaa
gtggagaaattgattattcttctctctttaccaggaatagacatcaatgttaaagacaat
gctggctggacgcctttgcatgaagcctgtaactatggcaacacagtgtgtgtccgggaa
attttgcaacgttgtccagaggtagatctgctcactcaagtggacggggtgactcctttg
catgatgcactgtcaaacggacatgtagaaattggcaagctgcttctacagcatgggggc
ccagagcttttacagcagaggaactctaagggggagttgcccttggattatgtgctgtcc
cctaaagacaaggaagaactatttgccattacaaatatagacgatacagtggacaacttt
catgctaagacacagaaacatttttatcacgaacaactggaatttggttcatttttactt
agtaggatgttgattagtttttgttcaatatttgatttatcctcagaattcatcctagct
ttcaaagggttaagtcatctaaatgagttgcttatggcatgcaatactgatacagaaccc
accagtgcacattctgactggctactagatctttatactaggaatataaagacattaaag
aagctcccaagtgttcttaaggaactgcctgagaatctaaatgtatgtcctggagttcat
actgaggccttattggtgaccctggaaatgatgtgtcagtcaatcacagaggtgtcataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   RefGene (27)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (6)   
   RefSeq(nuc) (4)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (52)   

Download RDF
DBGET integrated database retrieval system