KEGG   Rattus norvegicus (rat): 294693
Entry
294693            CDS       T01003                                 
Symbol
Gtf2h2
Name
(RefSeq) general transcription factor IIH subunit 2
  KO
K03142  transcription initiation factor TFIIH subunit 2
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03022  Basal transcription factors
rno03420  Nucleotide excision repair
rno05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    294693 (Gtf2h2)
  09124 Replication and repair
   03420 Nucleotide excision repair
    294693 (Gtf2h2)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    294693 (Gtf2h2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    294693 (Gtf2h2)
   03400 DNA repair and recombination proteins [BR:rno03400]
    294693 (Gtf2h2)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     294693 (Gtf2h2)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     294693 (Gtf2h2)
SSDB
Motif
Pfam: Ssl1 VWA_2 C1_4 VWA HscB_4_cys VWA_3
Other DBs
NCBI-GeneID: 294693
NCBI-ProteinID: NP_001070896
RGD: 1310499
Ensembl: ENSRNOG00000018230
UniProt: A0JN27
Position
2:complement(33358863..33386726)
AA seq 396 aa
MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH
LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL
SGNPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPS
NIYDLIKTLKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLARHVSPPP
ASSGSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLGGYFCPQCRAKYC
ELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYKGERFCYGCQGELKDQHVYV
CTVCRNVFCVDCDVFVHDSLHCCPGCVHKIPTQSGV
NT seq 1191 nt   +upstreamnt  +downstreamnt
atggatgaagaacctgaaagaactaagcggtgggaaggaggctatgagagaacctgggaa
attcttaaagaagatgaaagtggatcacttaaagctacaatagaggatattctcttcaag
gcaaagaggaaaagagtgtttgagcaccatggacaagttcgacttggaatgatgcgccac
ctgtacgtggtggtggatgggtccagaacaatggaagatcaggatttaaagcccaacaga
ctgacctgtactctaaagttgttggaatattttgtagaagaatattttgatcaaaaccct
atcagtcagattggcataattgtaactaagagtaaaagagctgaaaaactgactgaactc
tcaggaaacccaaggaaacacataacatctttgaagaaagctgtagatatgacctgccat
ggagaaccatcactctataattccttaagcatggctatgcaaaccctaaaacacatgccc
ggacacacaagcagagaagtgctcatcatcttcagcagcctcacgacctgtgacccctct
aatatttatgacctcatcaagaccctgaagacagctaaaattagagtgtctgttattggg
ttgtctgcggaggttcgagtttgtactgtacttgctcgagaaactggtggcacataccac
gtcatcctagatgagacccattacaaggagctgttagcccgtcatgtgagccctcctccc
gccagctccggctccgagtgctcccttatccgcatgggattccctcagcataccattgcc
tctctgtctgatcaggatgcaaaaccatccttcagcatggcgcatttggataataatagc
actgaaccagggcttacattgggaggctatttctgcccacagtgtcgagcaaagtactgt
gagcttcctgtcgaatgtaaaatatgtggtcttactttggtgtctgcacctcacttggca
agatcttatcatcatttatttcctttggatgcttttcaagaaatccccctggaagaatat
aaaggagagaggttttgttatggatgtcagggtgaattgaaagaccaacatgtctatgtt
tgcacagtgtgccggaacgtcttctgtgtggactgcgatgtctttgttcacgactctctc
cactgctgtcctggctgtgttcataagatcccaactcagtcaggtgtttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (6)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (4)   
DNA sequence (13)   
   RefSeq(nuc) (5)   
   GenBank (4)   
   EMBL (4)   
Protein domain (6)   
   Pfam (6)   
All databases (38)   

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