KEGG   Rattus norvegicus (rat): 29497
Entry
29497             CDS       T01003                                 
Symbol
Ptbp1
Name
(RefSeq) polypyrimidine tract-binding protein 1 isoform a
  KO
K13218  polypyrimidine tract-binding protein 1
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    29497 (Ptbp1)
   03041 Spliceosome [BR:rno03041]
    29497 (Ptbp1)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Trans-acting binding proteins
     29497 (Ptbp1)
Spliceosome [BR:rno03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   Other SAPs
    29497 (Ptbp1)
SSDB
Motif
Pfam: RRM_5 RRM_1 RRM_8 RRM_occluded Nup35_RRM
Other DBs
NCBI-GeneID: 29497
NCBI-ProteinID: NP_001257986
RGD: 62047
Ensembl: ENSRNOG00000010448
UniProt: Q00438
Position
7:complement(10493199..10502957)
AA seq 556 aa
MDGIVPDIAVGTKRGSDELFSTCVSNGPFIMSSSASAANGNDSKKFKGDNRSTGVPSRVI
HVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMSTEEAANTMVNYYTSVAPVL
RGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQS
PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSL
DGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGAPG
IMSASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAG
NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLN
GHKLHGKSVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKPGSKNFQNIFPPSAT
LHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHD
LGENHHLRVSFSKSTI
NT seq 1671 nt   +upstreamnt  +downstreamnt
atggacggcatcgtcccagacatagcagtcggtacaaagcggggatccgacgagctcttc
tccacgtgtgtcagcaacggccccttcatcatgagcagctcggcctcagcagccaacgga
aatgatagcaagaagttcaaaggtgataacaggagcacaggagttccttccagagtcatc
catgtccgaaagctacctagtgatgtcactgagggcgaggtcatctccctggggctgccc
tttgggaaagttaccaacctccttatgctgaaggggaagaaccaggccttcattgaaatg
agcacagaggaggctgccaacactatggttaactactacacatcggtggcgccagtgctt
cgtggacagcccatctacatccagttctccaaccacaaggagctcaaaaccgacagctcg
cccaaccaggcacgtgcccaggcagccctgcaggctgtgaactccgtacagtcaggaaac
ctggccttggcagcctctgctgctgccgtggatgcaggaatggcaatggcaggccagagc
ccagtgctcaggatcattgtggagaaccttttctacccagtgacactggacgtgctgcac
cagatcttctcgaagtttggcacagtcctgaagatcatcacgttcaccaagaacaaccag
ttccaggcgctgctgcagtatgctgaccctgtgagcgcccagcatgccaagctgtccctg
gatggccagaacatctacaatgcctgctgcacgctgcgcatcgacttctccaagctcacc
agtctcaacgtcaaatacaacaacgacaagagccgagactacacacgccctgacctgccc
tctggagacagccagccatcactggatcagaccatggcagcagcctttggtgcgcccggc
ataatgtcagcctctccgtatgcaggagccgggttccctcccacctttgccatccctcag
gccgcaggcctctctgttcctaatgtccatggagccctggcacccctggccataccctct
gctgctgctgctgctgctgcagccggccgcattgccatcccagggctggcaggcgccggg
aattccgtccttttggtcagcaacttgaaccctgagagagtcacaccccaaagcctcttt
attctcttcggcgtctacggtgatgtgcagcgggtgaagatcctgttcaacaagaaggag
aacgcacttgtgcagatggcagacggcagccaggcccagctggccatgagccacctgaac
gggcacaagctgcatgggaagtcagtgcgcatcaccctgtcaaagcaccagagtgtgcag
ctgcctcgtgagggacaggaggaccagggcctgaccaaggactatggcagctcaccgctg
caccgcttcaagaaacctggctccaagaactttcagaacatctttcctccctcagctacc
ctgcacctctccaacatcccgccctctgtgtcagaggatgacctcaagagcctcttctcc
agcaatggcggtgtggtcaaaggcttcaagttcttccagaaggaccgcaagatggcactg
atccagatgggctctgtggaggaggcagtgcaggcactaattgagctgcacaaccatgac
ctgggcgagaaccaccacctgcgagtgtccttttccaagtccaccatctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (6)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (4)   
DNA sequence (21)   
   RefSeq(nuc) (5)   
   GenBank (8)   
   EMBL (8)   
Protein domain (5)   
   Pfam (5)   
All databases (42)   

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