KEGG   Rattus norvegicus (rat): 295027
Entry
295027            CDS       T01003                                 
Symbol
Pcdh18
Name
(RefSeq) protocadherin-18 precursor
  KO
K16499  protocadherin delta 2
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:rno04515]
    295027 (Pcdh18)
Cell adhesion molecules [BR:rno04515]
 Cadherins
  Protocadherins
   295027 (Pcdh18)
SSDB
Motif
Pfam: Cadherin Cadherin_2 Cadherin_3 TMEM154 Syndecan Cadherin_C_2 Viral_Beta_CD PepSY
Other DBs
NCBI-GeneID: 295027
NCBI-ProteinID: NP_001093994
RGD: 1305870
Ensembl: ENSRNOG00000009949
UniProt: B5DEL4
Position
2:complement(135982929..135996917)
AA seq 1135 aa
MHQINTKMHFRFALSLLMAFFSHDVLGKNLKYRIYEEQRVGSVIARLSEDVADVLLKLPN
PSAIRFRAMPRGNSPLLVVNENTGEISIGAKIDREQLCQKNLNCSIEFDVLTLPTEHLQL
FHIEVDVLDINDNSPQFSRPVIPIEISESAAVGTRIPLDSAFDPDVGENSLHTYSLSAND
YFNIEVRTRTDGAKYAELIVVKELDRELKASYELQLTASDMGVPQRSGSSILKISISDSN
DNSPAFEQPSYTIQLLENSPVGTLLLDLNATDPDEGVNGRIVYSFSSHVSPKIIETFRID
SERGHLTLFKPVDYEITKSYEIDVQAQDLGPNSIPAHCKIIIKVVDVNDNKPEISINLMS
PGKEEVSYVFEGDPIDTFVAIVRVQDKDSGLNGEIICKLHGHGHFKLQKTYENNYLILTN
ATLDREKRSEYSLTVIAEDKGTPNLSSVRHFTVQVNDINDNPPRFQRSQYEFVISENNSP
GAYITTVTATDPDLGENGHVTYTILESFVLGSSITTYVTIDPSNGAIYALRIFDHEEVSQ
ITFVVEARDGGSQKQLSSNTTVVLTIIDENDNVPVVVGPAMHNNTADISIPKGVESGFHV
TRLRVVDRDSGANAEFTCSIVAGNEENIFIIDPRSCDIHTNVSIDSISSTEWALSVIIQD
KGNPPLHTKVLLRCMVFDYTESVTSTAMTSVSHASLDVSMIIIISLGAICAVLLVIMVLF
ATRCNREKKDTRSYNCRVAESTYQHHPKRPSRQIHKGDITLVPTINGTLPIRSHHRSSPS
SSPTLERGQMGSRQSHNSHQSLNSLVTISSNHVPENFSLELTHATPAVEQVSQLLSMLHQ
GQYQPRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDYDLGRDSPIDRLLGEG
FSDLFLTDGRIPAAMRLCTEECRVLGHSDQCWMPPLPSPSSDYRSNMFIPGEEFPAQPQQ
QHSHPGLDDDSQPAESGEKKKSFSTFGKDSPSDEDSGDSSTSSLLSEMNSVFQRLLPASL
DTYSECSEVDRSNSLERRKGPAQGKTGGYPQGVAAWAASTHFQNPTSSSGTPLGTHSSVQ
PSSKWLPAMEEIPENYEEDDFDNVLNHLSDGKHELMDASELVAEINKLLQDVRQS
NT seq 3408 nt   +upstreamnt  +downstreamnt
atgcaccaaataaatactaaaatgcactttagattcgcactttcacttctgatggcgttt
ttcagccacgatgtcctgggtaagaatctgaaatacaggatttatgaggagcagagggtc
ggatcggtaattgctagactatcagaagatgtggctgatgttttactgaagctaccaaat
ccttctgccattcgttttcgagccatgccacgggggaattctcctctcctggtcgtaaat
gagaataccggagaaatcagcataggggctaaaatcgaccgcgagcaactatgccaaaag
aacttgaactgttcgatagagtttgatgtgctcactctgccgaccgagcatctgcagctg
ttccatattgaagtggacgtgttggacattaatgacaattcccctcaattctcgagaccc
gtcattcccattgagatatcggagagcgcagcagttgggactcgcatccctctggacagt
gcgttcgaccccgatgttggggaaaattccctccacacctactcgctctctgctaatgat
tattttaatatcgaagtgcggaccaggacggacggggccaagtatgctgaactcatagtg
gtgaaagagttggatcgggagctgaaggctagctatgagctgcagctcacggcctctgac
atgggagtgcctcagaggtctgggtcctccatcctgaaaataagcatttcggattccaac
gacaacagcccggcctttgagcagccctcttacacaatacaactcttagaaaactcccca
gttggaaccttgctcctcgatctaaatgccactgatcctgatgagggcgttaatgggaga
attgtatattctttcagcagccatgtgtctcccaaaattatagagacttttaggatcgac
tcagaaagaggacacttgactcttttcaagccggtggattatgaaatcaccaagtcctat
gagatagatgttcaagcccaagatctgggtcccaattccattcctgctcattgcaaaatt
ataattaaggtcgtggatgtcaatgacaataagcctgaaattagcataaacctcatgtcc
cctggaaaagaagaagtgtcttatgtttttgaaggggatcccattgatacatttgttgct
atcgtcagggttcaagacaaggattctgggctgaatggggaaataatctgtaagcttcat
gggcatgggcactttaaacttcagaagacttatgaaaacaactacttaatcttgaccaat
gccactctggatagagaaaagagatctgagtacagtttgactgtgattgctgaggacaag
ggaacacccaacctctcttcagtgagacattttactgttcaagtcaatgacataaatgac
aatccacctcgcttccagaggagccaatatgaatttgtcatctcagagaataattcgcca
ggggcgtacatcaccacagttacagccaccgatccagacctgggtgaaaatgggcatgtg
acatacaccattttggagagttttgtcttgggaagttccattaccacgtatgtaaccatt
gatccatccaatggcgccatctatgccctcaggatctttgatcatgaggaagtgagtcag
atcacttttgtggtggaagcaagggatggagggagtcagaagcaactctcaagcaacacc
acagttgtgctgaccatcattgacgagaatgacaatgtccctgtggttgtagggcctgca
atgcacaacaacactgcagacatctccatccccaaaggagtcgaaagtggtttccatgtc
acaagactaagggtagtggacagagactctggtgcaaatgctgaattcacctgctccata
gtagctggtaatgaggaaaacatctttatcatagatccaaggtcatgtgacatccatacc
aacgtcagcatagactccatttcctccaccgaatgggcactttcagttatcatccaggac
aagggcaatcctcctctgcacaccaaagtcctcctgaggtgcatggtctttgactataca
gaatctgtgacaagcacagccatgacttctgtcagtcacgcatccttggatgtgtctatg
atcataattatttccttaggggcaatctgtgcagtgttgctggttattatggtactgttc
gccacgaggtgcaatagagaaaagaaagacaccaggtcctacaactgcagggtggcagaa
tccacttaccagcatcatcccaaaaggccgtccaggcagattcacaaaggagacattaca
ctggtgcccaccatcaatggtactctgcccatcagatctcaccacagatcctctccatct
tcatctccaaccttggaaagggggcagatgggcagccgccagagtcacaacagtcaccag
tcactcaacagtttggtgaccatctcctcaaaccacgtgccagagaatttttcattagaa
ctcacccatgccactcctgctgttgagcaggtctcacagcttctctccatgctccaccag
gggcaatatcagccacggccaagctttcgaggaaacaaatattccaggagctatagatat
gcccttcaagacatggataaatttagcttgaaagacagtggccgtggagatagtgaagca
ggagacagtgattatgatttggggcgagattctccaatagacaggctcctgggagaagga
ttcagtgacctctttctcactgatggaagaattccagcagccatgaggctatgtacggag
gaatgcagagtcctgggccactctgaccagtgctggatgcctccactgccctcgccatcc
tcagactacagaagcaacatgttcatccccggagaagagttcccggctcaacctcaacaa
cagcattctcatccgggccttgatgatgacagtcagcctgccgaatctggggagaaaaaa
aagagcttttccacctttgggaaggattcccctagcgacgaggactccggggactctagc
acatcatctctgctatcagaaatgaacagtgtgttccaacgcctcctccccgcatcccta
gatacctattctgaatgcagcgaagtggaccggtccaactccctggaacgtcgaaagggt
ccagcacagggcaaaactgggggttacccacaaggggttgcagcctgggcagccagcaca
cattttcagaaccccaccagcagctctgggacccctctggggactcactccagtgtgcag
ccttcttccaagtggttgccagctatggaggagatccctgaaaactacgaggaagatgat
tttgacaatgtgctgaaccatcttagtgatgggaaacacgaactcatggatgccagcgag
ctggtagctgagatcaacaaactgcttcaagatgtccgccagagctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (8)   
   Pfam (8)   
All databases (26)   

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