KEGG   Rattus norvegicus (rat): 29532
Entry
29532             CDS       T01003                                 
Symbol
Ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
  KO
K19036  ATP-dependent RNA/DNA helicase IGHMBP2 [EC:5.6.2.5 5.6.2.3]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:rno03009]
    29532 (Ighmbp2)
   03012 Translation factors [BR:rno03012]
    29532 (Ighmbp2)
Enzymes [BR:rno01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     29532 (Ighmbp2)
    5.6.2.5  RNA 5'-3' helicase
     29532 (Ighmbp2)
Ribosome biogenesis [BR:rno03009]
 Eukaryotic type
  Other ribosome biogenesis factors
   29532 (Ighmbp2)
Translation factors [BR:rno03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    29532 (Ighmbp2)
SSDB
Motif
Pfam: AAA_11 AAA_12 SMUBP-2_HCS1_1B R3H AAA_30 AAA_19 ResIII zf-AN1 Viral_helicase1 DEAD nSTAND3 AAA_16 SLFN-g3_helicase AAA_22 Helicase_RecD UvrD-helicase IstB_IS21 PhoH AAA_25 Flavi_DEAD AAA Zot UvrD_C_2 ABC_tran HSA VWA_2 NTPase_1 ATPase Herpes_ori_bp DAP3 SRP54
Other DBs
NCBI-GeneID: 29532
NCBI-ProteinID: NP_113774
RGD: 68325
Ensembl: ENSRNOG00000013456
UniProt: Q9EQN5
Position
1:complement(209935922..209958570)
AA seq 988 aa
MDSSTVESFVAQQLQLLELERDAEVEERRSWQEHSSLKELQSRGVCLLKLQVSGQRTGLY
GQRLVTFEPRKFGPAVVLPSNSFTSGDIVGLYDTNESSQLATGVLTRITQKSVIVAFDES
HDFQLNLDRENTYRLLKLANDVTYKRLKKALLTLKKYHSGPASSLIDVLLGGSTPSPATE
IPPLTFYNTTLDPSQKEAVSFALAQKEVAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCC
APSNIAVDNLVERLALCKKQILRLGHPARLLESVQQHSLDAVLARSDNAQIVADIRRDID
QVFGKNKKTQDKREKSNFRNEIKLLRKELKEREEAAIVQSLSAADVVLATNTGASTDGPL
KLLPEDYFDVVVVDECAQALEASCWIPLLKAPKCILAGDHKQLPPTTVSHKAALAGLSRS
LMERLAEKHGAAVVRMLAVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPGVADT
EETSVPLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPY
NLQVDLLRQSLSNKHPELEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAV
TRARRHVAVICDSHTVNNHAFLKTLVDYFTEHGEVRTAFEYLDDIVPENYTHEGSRSHSC
APKPKCPTTSVRKPASAQESRQEARAATGHSRRKPSEKPLGSQVQPQHSSKANGSDRTGG
TDRTEHFRAMIEEFVASKEAQLEFPTSLSSHDRLRVHQLAEEFGLKHDSTGEGKARHITV
SRRSPAGSGSATPQPPSPPSPAQAEPEPQVEQPVGQPHGSTQLDLKALHLERLQRQQGCQ
AQSQLGGGSRPQKAPQKKKKKEPKGPAMALPSEEDFDALVSAVVKADNTCSFTKCSASTT
TLGQFCMHCSRRYCLSHHLPEIHGCGEKARAHARQRISREGVLYAGSGTKDRALDPAKRA
QLQRKLDKKLGELSSQRTSKKKEKERGT
NT seq 2967 nt   +upstreamnt  +downstreamnt
atggactcgtccaccgtggagagttttgtggcccagcagctacagctgttggagctagag
cgggacgccgaggtggaggagcgcaggtcctggcaggaacacagttctctgaaagagctt
cagagccgaggggtgtgtttgctgaagcttcaggtatcgggccagcgcactgggttgtat
ggacagcggctggtcacctttgagcccaggaagtttgggcctgcagtggtgcttcccagc
aacagcttcacctctggtgatatcgtgggtctgtatgatactaatgaaagcagccaactg
gccactggggtcctgacccgcatcacccaaaaatcggtcatagtggcctttgatgagtcc
catgatttccagttgaacctggaccgagaaaatacctacagactgctgaagcttgccaat
gacgtcacctacaaacgcctgaaaaaagctctgctgacactgaagaagtaccattctggg
ccagcatcctcgctcattgatgtcctgttgggtggctccacccccagtcctgccactgaa
atacccccgctcactttctacaacacgaccctggacccttcccagaaagaagctgtgtct
tttgcgctggcgcagaaagaagttgccatcatccatgggcctcctggcactgggaaaacc
acaactgtggtggaaataatccttcaagctgtgaagcaaggcttaaaggttctatgctgt
gctccctccaacatcgctgtggacaacctggtggagcgtctggctctgtgcaagaagcag
attcttcgcctgggtcaccctgcccgcctcctggagtccgttcagcagcactcactggac
gcagtgctagcacgcagtgacaatgcccagattgttgctgacatcagaagggacattgac
caggtctttggcaagaacaaaaagacccaagataagagagaaaaaagtaattttcgaaat
gaaattaagctgctaaggaaggaactgaaggaaagggaagaagcagccatagttcagagc
ctcagtgcagcagatgtggttctagccaccaacacaggtgcatctactgatggccccctg
aagctgctgcctgaggactactttgatgtggtggtggtggacgagtgcgcccaggcccta
gaagccagctgctggattcccctgctgaaggcccctaagtgcatcctagctggagaccac
aaacagctgccacccaccactgtctctcacaaggcagcactggctgggctgtcccgcagc
ctgatggagcgtctggcagagaagcatggtgctgctgtggtaaggatgctggcggtccag
taccgaatgcaccaggccatcacgcgctgggcctcggaagccatgtaccacggacagctc
actgcccatccctctgtggcaggacaccttctgaaggacctcccaggtgtggctgacaca
gaggagacgagtgtccctctgctgctcatagacacagctggctgcgggctgctggagctg
gaggaggaagacagccagtccaagggaaaccccggtgaagttcgcctcgtcactttgcac
atccaggctctggtggatgctggggtccaggctggtgacattgccgtcatcgcaccctac
aaccttcaggtggatctgctcagacagagcctctctaacaagcaccctgagctggagatc
aagtctgttgacggctttcaaggccgagagaaggaggctgtgatcctgacctttgtcagg
tccaacaggaaaggtgaagttggttttctggctgaggacaggcggatcaatgttgctgtc
acccgtgctaggcggcatgtggcggtcatctgtgattcccacactgtcaacaaccacgcc
tttttgaagaccttggtggattatttcacagagcatggggaggtacgcacagcctttgag
tacctggatgacatcgtccctgagaactatacccatgagggctcccggagccacagttgt
gcccccaaacccaagtgccccaccacctcagtcagaaagcctgccagtgctcaggagagt
agacaagaggccagagcagccactggacacagccgcaggaagccaagtgagaagccccta
ggctctcaagtccagccccagcacagctccaaagcaaatggctctgaccgaactggaggc
acagaccggacagagcactttagggctatgattgaggagttcgtggctagcaaggaggcc
cagttggagtttcccacatccctgagctcccatgacagacttcgagtccaccaattagct
gaggagttcgggctgaagcatgacagcaccggggaggggaaggcacggcacatcacagtg
agcaggaggagccctgctggttctggcagtgcaaccccacaacctccctcaccgcccagc
cctgcacaggctgagcctgagcctcaggtagagcagcctgtaggacagccacatggctcc
acacagctggatctgaaggcacttcacctggagaggctgcagcgacagcaaggctgccag
gcccagtctcagctgggcgggggttcgaggccacagaaggctccacagaagaaaaagaaa
aaagaaccgaaaggcccagccatggctctgccctctgaggaggacttcgatgccctagtg
tcagctgtggtgaaggctgacaacacctgtagcttcaccaagtgctcggccagcaccacc
acgctgggccagttctgcatgcactgtagccgccgctattgcctcagccaccatctgccc
gagatccatggctgtggtgaaaaggctcgtgcccatgcccggcagaggattagccgggaa
ggagtactctacgcaggcagtgggaccaaggacagggccctggacccagccaagagggcc
cagctgcagaggaaactggacaagaagctgggcgagctcagcagccagaggacaagcaag
aagaaggagaaggagagggggacgtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (31)   
   Pfam (31)   
All databases (52)   

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