KEGG   Rattus norvegicus (rat): 295568
Entry
295568            CDS       T01003                                 
Symbol
Hltf
Name
(RefSeq) helicase-like transcription factor
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rno04121]
    295568 (Hltf)
   03400 DNA repair and recombination proteins [BR:rno03400]
    295568 (Hltf)
Enzymes [BR:rno01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     295568 (Hltf)
Ubiquitin system [BR:rno04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    295568 (Hltf)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    295568 (Hltf)
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4_2 DEAD zf-C3HC4_3 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-RING_5 ResIII zf-ANAPC11 HDA2-3 zf-C3HC4_4 zf-Nse zf-rbx1 Prok-RING_4
Other DBs
NCBI-GeneID: 295568
NCBI-ProteinID: NP_001099948
RGD: 1309031
Ensembl: ENSRNOG00000000082
UniProt: A6IHC7 D3ZMQ9
Position
2:104478725..104538531
AA seq 974 aa
MSWKFKRDSVWKYSQSAQYGAHENIPRLSYPPFFPRFEFQDIIPPDDFQTSDEELDLVLF
GTMRGQVVGIRYYTGVVNNNEMVALEREPNNPYDKNAIKVNNVNGNQVGHLKRDLAAALA
YIMDNKLAQVEGVVPFGASNTFTMPLHMTFWGKEENREVVLDHLKKHGFKLGPTPKTVGS
SLENTWGSGRAGPSYSRPVHVAVQMTTEQLKTEFDKLFEDLKEDDRTIEMEPAEAVETPL
LPHQKQALAWMIARENSKELPPFWELRNDLYYNTITNFSVKERPENVHGGILADDMGLGK
TLTAIAVILTNFDDGRPLLGKRGKESHPGKEYKDETVKLRGSNTNKTTDGHSEPSACSEE
PSISDVSEKSNVSDLFSFFSKRRKISVQSTESSESEEIETSKLSQKMKGKLKNTQLDTKS
KVKGTSVMESSKKCDTGERTRTTLIICPLSVLSNWIDQIGQHIKSEVDLNLYVYYGPDRI
RDSTWLSKQDIILTTYNILTHDYGTKDNSPLHSIKWLRVILDEGHAIRNPNAQQTKAVLE
LEAERRWVLTGTPIQNSLKDLWSLLSFLKLKPFTDREWWHRIIQRPVTTGDEGGLRRLQS
LIKSITLRRTKTSKIKGKPVLELPERKVFIQHITLSVEERKIYQSVKNEGKATIARYFTE
GTVLAHYADVLGLLLRLRQICCHVHLPTNGTSSSDPSRSDTPEELRKMLVTKMKLILSSG
SDEECSICLDSLTFPVITHCAHVFCKPCICQVIQREQPHAKCPLCRSNIHGHNLLECPPE
ELACDSDNKSDMEWTSSSKINALMNALIELRTKDPNIKSLVVSQFTTFLSLIETPLKASG
FVFTRLDGSMAQKKRVESIQCFQNTDAGSPTIMLLSLKAGGVGLNLCAASRVFLMDPAWN
PAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNMKRELAAGAFGTKKTDADEM
KQAKINEIRTLIDL
NT seq 2925 nt   +upstreamnt  +downstreamnt
atgtcttggaagttcaagagggattctgtttggaagtattcacagtctgcccagtatgga
gcccatgaaaatattccaagactttcatacccacctttctttccacgttttgaattccaa
gacattatccctccagatgacttccaaactagtgatgaagagctagatttggttttattt
ggaactatgagaggacaagttgttggaatacgctattacacaggagttgtgaataacaat
gaaatggttgctttagaacgagagcctaataacccgtatgataagaatgctattaaagta
aataatgtgaatggaaatcaggttggccatctaaagagagatcttgcagctgccttggcc
tatatcatggacaacaaattggcccaagtggaaggggtagttccttttggtgcaagtaat
acttttaccatgcctcttcatatgactttctggggaaaagaagaaaatagagaggtggtt
ttagatcatttgaagaaacatggatttaagttgggtcccacaccaaaaactgtaggatcg
agtttggagaatacatggggctctggaagagctggaccaagctatagtaggccggttcat
gttgctgtacagatgacaactgaacagctcaaaacggaatttgacaaattatttgaagat
ttaaaagaagacgatagaactattgaaatggagccagctgaggctgttgaaacaccattg
ctcccacaccaaaaacaagctctagcttggatgattgcacgagagaacagcaaagaactt
ccacccttctgggaactgcgaaatgacctgtattataatacaataacaaatttttctgtg
aaggaacgaccagaaaatgttcatggaggaattttagctgatgatatgggtttgggcaaa
actcttactgctattgctgtaattcttaccaactttgatgatggcaggccgcttcttggt
aaaagaggcaaggagagtcacccaggaaaggaatacaaggacgagaccgttaaactcaga
ggaagtaatacgaacaagacgacagatggacactcagagccatcagcatgtagtgaagaa
cccagtatttcagatgtttcggagaagagtaatgtgtcagatttgtttagtttcttctct
aaaagaagaaaaatttctgtacagtccactgaaagcagtgaatcagaggaaattgaaaca
agtaaactgtcccagaaaatgaaaggcaagctgaaaaatacacagttagatactaaaagt
aaagtaaaaggtacatctgtgatggagagctcaaagaagtgtgacactggagagaggaca
agaacaacactgatcatctgtccactctctgtgctgagcaattggattgaccagattgga
caacatataaaatcagaagtggacttgaatctttatgtttattatggtcctgatcgtatt
agagattcaacctggctttcaaaacaggatattattttgactacttataatattttaact
catgattatggaactaaagataatagtccattacacagcataaagtggttaagagtgatc
ctggatgaaggccatgccatacgaaatccaaatgctcaacagacaaaagctgttcttgag
ttagaggcagaaagaagatgggtattgacaggtactcctatccagaattctttgaaggac
ttgtggtctcttctgtcctttttaaaactgaaaccatttactgatagagaatggtggcat
agaataatacagcgtcctgtcacaacaggagatgagggaggacttaggcgtttacagtcc
ttaattaaaagcatcacacttagaagaacaaagacaagcaaaattaaagggaaacctgtc
ttggagttaccagaaaggaaagtatttattcagcacattactctgtcagtcgaagagaga
aagatttatcaatctgttaaaaatgaaggcaaagctactattgcaaggtattttactgaa
ggtactgtccttgcacactatgcagatgtcttgggtcttctgcttagactgcggcagatt
tgttgtcatgtccatcttcctacaaatggaacgtcttcaagtgacccctccagaagcgac
acacctgaagaactgaggaagatgttagtaacgaagatgaagttaattctgagctctggt
tcagatgaagaatgttcaatttgcctggattcattaacatttcctgtgatcacacattgt
gcacatgtgttttgtaaaccttgcatttgccaggtcattcagcgcgagcagccacatgca
aagtgtcctttatgcagaagtaatatacatggacataatttattagaatgtcctccagaa
gaattggcatgtgacagtgacaacaagtccgatatggaatggacgtccagttcaaagatt
aatgctctaatgaatgctttgattgagttacggacaaaggaccccaacataaaaagttta
gttgtctctcagtttaccacattcctgtctttaatagaaacaccactgaaagcctcagga
tttgtgtttactcgcttagacggttccatggctcaaaagaaaagagttgaatcaattcag
tgttttcaaaatacagacgcaggatcacctactataatgctactgtccttaaaagcaggc
ggagtcggcttgaatctttgtgcagcttctcgagtgttcttaatggacccagcctggaat
cctgctgcagaggatcagtgctttgaccgatgccatcgacttggccagaaacaagaggtt
atcattacaaagttcattgtgaaggattctgttgaagaaaatatgttgaaaatacaaaac
atgaaaagagagcttgcagccggagcctttggaactaagaaaacagatgctgatgaaatg
aaacaagctaaaatcaatgaaatcagaactttaattgatctataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (7)   
   UniProt (2)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (17)   
   Pfam (17)   
All databases (42)   

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