KEGG   Rattus norvegicus (rat): 29580
Entry
29580             CDS       T01003                                 
Symbol
Fdft1
Name
(RefSeq) squalene synthase
  KO
K00801  farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno00100  Steroid biosynthesis
rno01100  Metabolic pathways
Module
rno_M00101  Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:rno00001]
 09100 Metabolism
  09103 Lipid metabolism
   00100 Steroid biosynthesis
    29580 (Fdft1)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01006 Prenyltransferases [BR:rno01006]
    29580 (Fdft1)
Enzymes [BR:rno01000]
 2. Transferases
  2.5  Transferring alkyl or aryl groups, other than methyl groups
   2.5.1  Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
    2.5.1.21  squalene synthase
     29580 (Fdft1)
Prenyltransferases [BR:rno01006]
 Terpene biosynthesis
  Squalene/phytoene synthase
   29580 (Fdft1)
SSDB
Motif
Pfam: SQS_PSY Octopine_DH
Other DBs
NCBI-GeneID: 29580
NCBI-ProteinID: NP_062111
RGD: 61834
Ensembl: ENSRNOG00000021314
UniProt: Q02769 A6K6F7
Position
15:complement(41588114..41616168)
AA seq 416 aa
MEFVKCLGHPEEFYNLLRFRMGGRRNFIPKMDRNSLSNSLKTCYKYLDQTSRSFAAVIQA
LDGDIRHAVCVFYLILRAMDTVEDDMAISVEKKIPLLRNFHTFLYEPEWRFTESKEKHRV
VLEDFPTISLEFRNLAEKYQTVIADICHRMGCGMAEFLNKDVTSKQDWDKYCHYVAGLVG
IGLSRLFSASEFEDPIVGEDTECANSMGLFLQKTNIIRDYLEDQQEGRQFWPQEVWGKYV
KKLEDFVKPENVDVAVKCLNELITNALQHIPDVITYLSRLRNQSVFNFCAIPQVMAIATL
AACYNNHQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIYQYIEEIYHRVPNSDPSASKAK
QLISNIRTQSLPNCQLISRSHYSPIYLSFIMLLAALSWQYLSTLSQVTEDYVQREH
NT seq 1251 nt   +upstreamnt  +downstreamnt
atggagttcgtgaagtgtctaggccacccggaggagttctacaacctgctgcgattccgc
atgggaggccggcggaatttcatacccaagatggaccggaactcgctcagcaacagcttg
aagacttgctataagtatcttgatcagaccagtcgcagcttcgccgcggttatccaggcg
ctggatggggacatacgtcatgcggtgtgtgtgttttacctgatcctccgagccatggac
acagtggaggatgacatggccatcagtgtggagaagaagatcccactgctgcgaaacttt
cacactttcctctatgagccggagtggcggttcaccgagagcaaggagaagcaccgagta
gtgctggaggacttccccacgatctccctggagtttagaaatttggctgagaaatatcaa
acagtgatcgctgacatctgtcacaggatgggatgtgggatggcagaatttctaaacaag
gatgtaacctccaaacaggactgggacaagtactgtcactatgttgctggactggtggga
atcggcctttctcgcctattctctgcctcagagtttgaagatcccatagttggtgaagac
acagagtgtgccaattctatgggtctgtttctgcagaaaacaaatatcattcgtgattat
ctggaagaccaacaagaaggaagacagttttggcctcaagaggtatggggcaaatatgtt
aagaagctggaagactttgttaagccagagaacgtagatgtggccgtgaagtgcttgaat
gaactcataaccaacgccctacaacacatccctgacgtcatcacctacctgtcaaggctc
cggaaccaaagtgtgtttaacttctgtgccattccacaggtaatggccattgctacgctg
gctgcctgttacaataaccatcaggtattcaagggagtagtgaagattcggaaggggcaa
gcagttaccctcatgatggatgccaccaacatgccagctgtcaaagctatcatataccag
tacatagaagagatttatcaccgggtccccaactcagacccgtcagctagcaaggccaag
cagctcatctccaacatcaggacgcagagccttcccaattgccagctcatctcccgaagc
cactactcccccatttacctgtccttcatcatgctcttggctgccctgagctggcagtac
ttgagcactctgtcccaggtcacagaagactatgtccagagagaacactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (2)   
   KEGG MODULE (2)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (4)   
   KEGG ENZYME (1)   
   KEGG REACTION (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (11)   
   RefSeq(nuc) (1)   
   GenBank (5)   
   EMBL (5)   
Protein domain (2)   
   Pfam (2)   
All databases (42)   

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