KEGG   Rattus norvegicus (rat): 296083
Entry
296083            CDS       T01003                                 
Symbol
Vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
  KO
K20181  vacuolar protein sorting-associated protein 18
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04140  Autophagy - animal
rno04148  Efferocytosis
rno05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    296083 (Vps18)
   04148 Efferocytosis
    296083 (Vps18)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    296083 (Vps18)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rno04131]
    296083 (Vps18)
Membrane trafficking [BR:rno04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    296083 (Vps18)
   Hops complex
    296083 (Vps18)
SSDB
Motif
Pfam: Pep3_Vps18 Clathrin zf-RING_5 Vps39_2 zf-RING_16 zf-C3HC4_2 KNOX2 zf-RING_2 zf-ANAPC11 zf-RING_UBOX zf-rbx1 zf-C3HC4
Other DBs
NCBI-GeneID: 296083
NCBI-ProteinID: NP_001099969
RGD: 1311556
Ensembl: ENSRNOG00000013689
UniProt: F7F0E9 B5DFJ4
Position
3:126733276..126744130
AA seq 973 aa
MASILDEYEDSLSRSAVLQTGCPSVGIPHSGYVNAHLEKEVPIFTKQRIDFTPSERITSL
VVSCSQLCMSLGKDTLLRIDLGKASEPNRVELGRKDDAKVHKMFLDHTGSHLLVALSSTE
VLYMNRNGQKARPLARWKGQLVESVGWNKALGSESSTGPILVGTAQGQIFEAELSASEGG
LFGPAPDLYFRPLYVLNEEGGPAPVCSLEAERGPDGRGFVIATTRQRLFQFIGRAVEDAE
AQGFSGLFAAYTDHPPPFREFPGNLGYSELAFYTPKLRSAPRAFAWMMGDGVLYGSLDCG
RPDSLLSEEKVWEYPAGIGPGANPPLAIVLTQFHFLLLLADRVEAVCTLTGQVVLRDHFL
EKFGPLRHMVKDSSTGHLWAYTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYCRERPD
CLDTVLAREADFCFRQHRYLESARCYALTQSYFEEIALKFLEARQEEALAEFLQRKLAGL
KPTERTQATLLTTWLTELYLSRLGALQGDPDALNLYRDTRECFRTFLSSPRHKEWLFASR
ASIHELLASHGDTEHMVYFAVIMQDYERVVTYHCQHEAYEEALAVLARHRDPQLFYKFSP
VLIRHIPRQLVDAWIEMGSRLDARQLIPALVNYSQGGDAQQVSQAIRYMEFCVNVLGETE
QAIHNYLLSLYARGQPASLLAYLEQAGASPHRVHYDLKYALRLCAEHGHHRACVHVYKVL
ELYEEAVDLALQVDVDLAKQCADLPEEDEELRKKLWLKIARHVVQEEEDVQTAMACLASC
PLLKIEDVLPFFPDFVTIDHFKEAICSSLKAYNHHIQELQREMEEATASAQRIRRDLQEL
RGRYGTVEPQDKCSTCDFPLLNRPFYLFLCGHMFHADCLLQAVRPGLPTYKQARLEELQR
KLGTAPPPTKGSVKAKEAEAGAAAVGPSREQLKADLDELVAAECVYCGELMIRSIDRPFI
DPQHYEEEHLSWL
NT seq 2922 nt   +upstreamnt  +downstreamnt
atggcgtccatactggatgagtatgaggactcattgtcccgctcggccgtcttgcagact
ggttgccccagcgtgggcatcccccattctgggtatgtaaatgcccatctggagaaggag
gtgcctatcttcacaaagcagcggattgacttcaccccctccgagcgaatcaccagcctt
gttgtttcctgcagtcagctctgtatgagcctgggcaaggatacgctgctccgcattgac
ttgggcaaggcaagcgaacccaaccgtgtggagctgggccgcaaggatgatgccaaagtc
cacaagatgttcctggaccacactggctctcatctgctggttgctctgagtagcaccgag
gtcctgtacatgaaccgcaatggacagaaggcccggccgctggctcgctggaaggggcag
ctggtggagagtgtgggttggaacaaagcgctgggcagtgagagcagcaccggccccatc
ctggttggcacagctcaaggacagatctttgaagcagagctctcagctagcgaaggcggc
ctctttggccctgcccctgatctctacttccgtccactgtatgtcttaaatgaagaaggg
ggtccagcacctgtgtgctcccttgaggcggagcgtggccctgacggacggggctttgtc
attgctaccactcggcagcgcctcttccagttcataggccgagcagtagaagatgctgaa
gcccaaggcttctcgggcctctttgcagcctatacagaccacccaccgccattccgtgag
tttcctggcaacttggggtatagtgagttggctttctatacccctaagttacgctctgca
ccccgtgcctttgcctggatgatgggagatggtgtgctgtatggctcactggactgcggg
cgccctgactccctgctgagcgaggagaaagtgtgggaatacccagcagggattggtcct
ggggccaatccacccttagccatcgtcttgacccagttccatttcctactgctgctggcg
gaccgggtggaggctgtgtgtactctaacagggcaggtggtgctacgggatcacttcctg
gagaagtttggaccactgaggcacatggtgaaggactcgtccacgggtcacctctgggcc
tacactgagcgagcagtcttccgataccacgtgcaacgtgaggctcgggatgtctggcgc
acctacctggacatgaaccgctttgacctggccaaagagtattgtcgcgagcggccagat
tgcctagacacagtcctggcccgagaggctgatttctgctttcgtcagcatcgctacctg
gagagcgcccgctgctatgctctgacccagagctattttgaggagattgccctcaagttt
ttggaggcccggcaagaagaggcactggctgagtttctgcagcggaaactggccggcttg
aagccaactgagcgtactcaggccacactactgaccacttggctgacagagctctacctg
agccggcttggtgctctgcagggtgacccagacgccctgaatctctaccgggatacacgg
gagtgcttccgtacttttctcagtagccctcggcacaaagagtggctctttgccagccgg
gcctctatccatgagctgcttgccagtcacggggacacagagcatatggtgtattttgca
gtgatcatgcaggactatgaacgggtggtcacataccactgccagcatgaggcctatgag
gaggccctggctgtgctagcccgccaccgagacccccagctcttctacaaattctcgcct
gtcctcatccgacatatcccccgccagctggtggacgcctggattgagatgggcagccgg
ctggatgcccggcagctcattcctgccctggtgaactatagccaggggggcgacgctcag
caggtgagccaagccatccgctatatggaattctgtgtgaatgtgcttggcgagactgag
caggccattcacaactacctgctgtcactgtatgcccgtggccagccagcctcacttctg
gcctacctggaacaagctggggccagcccgcaccgtgtacactatgatctcaaatatgca
cttcgactttgtgctgagcacggccaccaccgcgcctgcgtccatgtctacaaggtgttg
gagctgtatgaagaggctgtggacctggccctgcaggtggatgtggacctggccaagcag
tgtgcagacctgccagaggaggatgaggaacttcggaagaaactatggctcaagatcgct
cggcatgtggtacaggaggaggaggacgtacagacagccatggcctgcttggccagctgc
cccttgctcaagattgaggatgtgttgcccttctttcctgactttgtcacaatcgaccac
tttaaggaggcaatctgtagttcacttaaggcctacaaccaccatatccaggagctacag
cgcgagatggaggaagccacagccagcgcccagcgtatccgacgagacttgcaggagctt
cgagggcgctatggcaccgtggagccccaggacaaatgctccacctgtgacttccctttg
ctcaaccgccccttttacctttttctctgtggccacatgttccacgctgactgtctgctg
caggccgtgaggcctggccttcctacctacaaacaggccaggcttgaggagttgcagcgc
aagctcgggactgcgcctcctccaaccaaaggctctgtgaaggccaaggaggcggaagct
ggggctgcagctgtggggcccagccgggaacagctcaaggctgacctcgatgagctggtg
gctgctgagtgtgtgtactgtggggagctgatgattcgctccattgaccggcccttcatc
gacccccagcactatgaggaggaacacctcagctggctgtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (12)   
   Pfam (12)   
All databases (30)   

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