KEGG   Rattus norvegicus (rat): 296098
Entry
296098            CDS       T01003                                 
Symbol
Lcmt2
Name
(RefSeq) tRNA wybutosine-synthesizing protein 4
  KO
K15451  tRNA wybutosine-synthesizing protein 4 [EC:2.1.1.290 2.3.1.231]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:rno03016]
    296098 (Lcmt2)
Enzymes [BR:rno01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.290  tRNAPhe [7-(3-amino-3-carboxypropyl)wyosine37-O]-methyltransferase
     296098 (Lcmt2)
  2.3  Acyltransferases
   2.3.1  Transferring groups other than aminoacyl groups
    2.3.1.231  tRNAPhe {7-[3-amino-3-(methoxycarbonyl)propyl]wyosine37-N}-methoxycarbonyltransferase
     296098 (Lcmt2)
Transfer RNA biogenesis [BR:rno03016]
 Eukaryotic type
  tRNA modification factors
   Methyltransferases
    296098 (Lcmt2)
SSDB
Motif
Pfam: LCM Kelch_4 Kelch_2 Kelch_6 Kelch_3 Kelch_1 Glyoxal_oxid_N
Other DBs
NCBI-GeneID: 296098
NCBI-ProteinID: NP_001011956
RGD: 1305829
Ensembl: ENSRNOG00000043002
UniProt: Q5XIA3
Position
3:complement(128553707..128555831)
AA seq 686 aa
MGPRSRQRRTGTVQSTNDSSSLSKRSLAAQGYVSDAFAPLLVPGIVRRTPLIHRGYYVRA
RAVRHCVRAFLDLTGAIRSPTRAQILSLGSGSDSLYFRLKAAGLLTRTAVWEVDFPDVSR
LKAKRIEETPELCAQTGPFKIGDSASTLCFESSDYRILGADLRELQRLGEALDSAGLDAT
SPTLILAEAVLTYLEPSRAAALIAWVAQRFPNALFVIYEQMKPGDAFGQIMLQHFRRLNS
PLHGLELFPDVEAQRQRFLQAGWTTCSALDLNEFYRRLIPADERRRVETLEPFDEFEEWH
LKCSHYFILAASRGDILSETPVFLPSEASFQIDPALPSGFLSASVVTSDHQHSSLQRYGH
TSVLLSPGIIFSAGGFGEQEGRHCRVSRFHLLSRSCDSEWKGCQISTLGTEGQWDGRLYH
TMTRLSDTRVLVLGGRLSPVNPASGALQLDIYKSEDNCPEGQNVVVTKAALEEGSMLSCW
RHSTTEVYYQNQRYLFVYGGRSVTDPVLSDCRFLHVETMAWVRIPVQGSSPEGRHSHSAC
SWQGGALIAGGLGASEEPLSSVFFLRPVSSGFLWESIHIQPSITPRYSHTAHVFNGKLLL
VGGVWIHSSSVPGVTVISLTTGLSSEYQIDTASVPWPLMLHNHSSALLPEEQQLLLIGGG
GNCFSFGTYFNPHTVGLDLSSLGLGQ
NT seq 2061 nt   +upstreamnt  +downstreamnt
atgggcccgcgaagccgccagcgccggacggggacggttcagagcaccaatgacagcagc
tccctcagcaagcgatcgctagccgcacaagggtacgtgagcgatgccttcgcgccgctg
ctggtcccagggatcgtgcggcgcacgccgcttatccaccgcggctattacgtgcgcgcg
cgcgccgtgcgtcactgcgtgcgcgccttcctcgatctcactggcgcgatccggtccccg
accagagcacagatcctgtccctgggctcaggttccgactcgctttattttcgtctgaaa
gctgcgggcctgctgacccgaactgctgtctgggaggtggactttccggacgtgtctcgg
ctcaaggcgaagaggatcgaggagaccccggagctgtgcgcgcagaccggtcctttcaag
atcggggactcagcgtcaactctgtgctttgagagctcggactaccgcatcctgggcgct
gacttgcgggagctccagcgattgggcgaggccctggacagtgctggcctggacgccacc
tccccaacgctgatcctggccgaggcggtgctgacctacctggagccttccagagctgca
gccctcatcgcctgggttgcccagcgtttccccaacgccctttttgtgatctatgagcag
atgaagccgggtgatgccttcgggcaaatcatgctgcagcactttcggcggttgaactca
cccctgcatggactggaactctttccggacgtggaggcccagcgccagcgcttcctacaa
gctggctggactacttgcagcgccctggacctgaacgagttctatcgccgccttatccct
gcagatgagcgccggcgagttgagacacttgagccctttgatgaatttgaggaatggcat
ctgaagtgttcccactatttcatcctggcagcatctaggggagatattctgtcagaaact
ccagtgtttctgccctcggaagcttcttttcagatagatcctgctttgccttcagggttt
ctttctgccagtgtagtcactagcgaccaccagcactcaagtctgcagagatatggccac
acctctgttctcttgagccctggcattattttcagtgcaggaggctttggagaacaagag
ggccgacactgccgggtgagcaggtttcacttgctctcgagatcctgtgactctgaatgg
aaaggctgccaaataagtactttggggactgaaggccagtgggatggacgcctttatcac
accatgacaaggctttcagatactcgggttctggttcttggagggagactatccccagta
aatccagcctctggggctctccaacttgatatatacaaaagtgaggataattgccccgag
ggccaaaatgtagtggtaacaaaggctgccttggaagaagggtccatgttgtcatgttgg
aggcattcaacaaccgaagtatactatcagaatcaaagatatttatttgtgtatggtggt
cgaagtgtgacggatcctgtactaagtgactgtcgttttctacatgtagagacaatggct
tgggtcagaatcccagtacaaggctcatcacccgaaggtcggcattcccacagcgcctgc
agttggcaagggggagcacttatcgctggaggtcttggggcttctgaggaaccgttgagt
tctgtattctttctcagaccagtatcctctggattcctctgggaatcaatacatatccag
ccctccattaccccaaggtactctcacactgctcatgtatttaatggaaagctgcttctg
gttggaggggtctggattcattcctcctcagttcctggagtgactgttatcagtttgact
acagggttgagctccgagtatcagattgacaccgcgtctgtgccatggccattaatgttg
cacaaccacagcagtgccctccttcctgaagagcagcagctcctgcttattggaggcgga
gggaactgcttttcctttggtacttacttcaacccccacacagtgggattagatctttcc
tccttaggtttagggcaataa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (4)   
   KEGG ENZYME (2)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (33)   

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