KEGG   Rattus norvegicus (rat): 296126
Entry
296126            CDS       T01003                                 
Symbol
Snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
  KO
K12854  pre-mRNA-splicing helicase BRR2 [EC:5.6.2.6]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    296126 (Snrnp200)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rno03041]
    296126 (Snrnp200)
Enzymes [BR:rno01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     296126 (Snrnp200)
Spliceosome [BR:rno03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    296126 (Snrnp200)
 Complex C
   U5 SnRNP specific factors
    296126 (Snrnp200)
SSDB
Motif
Pfam: Sec63 DEAD Helicase_PWI ResIII Helicase_C BRR2_plug AAA_22 AAA_30 PhoH SWI2_SNF2 DUF603
Other DBs
NCBI-GeneID: 296126
NCBI-ProteinID: NP_001032855
RGD: 1561120
Ensembl: ENSRNOG00000012157
UniProt: M3ZCQ2
Position
3:134882173..134911512
AA seq 2136 aa
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRREIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLIVLDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVI
VFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL
HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG
GHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD
NT seq 6411 nt   +upstreamnt  +downstreamnt
atggcggatgtgactgcccgcagtttgcagtacgagtacaaagcgaactcaaatcttgtg
ctccaagctgaccgctctctcattgaccggacccgccgggatgaaccgacaggagaggtt
ctgtccctggttgggaaattggagggaactcgaatgggagataaggctcaaaggaccaaa
ccacagatgcaggaggaaagacgggccaagaggagaaaacgtgatgaggaccgacacgac
atcaacaagatgaaaggctatactctgctgtcagagggcattgatgagatggtgggcatc
atctataagcccaagacgaaggagacccgggagacctatgaggtgctgctcagtttcatc
caggctgctctcggggatcagcctcgagatattctttgtggggcagccgatgaagttctg
gctgttctgaaaaatgaaaagcttcgagacaaggagagaagaagggagattgacttgctg
ctgggtcagacagatgatacgagataccatgtgttagtaaacttgggcaagaagatcaca
gactatggtggcgacaaggagatccagaatatggatgacaacattgatgagacttatggc
gtgaatgtgcagtttgagtctgatgaggaggaaggtgatgaagatgtgtatggggaagtc
agagaagaagcttctgatgatgacatggaaggggatgaagctgttgtgcgctgtaccctc
tccgctaatcttgtagcctcaggcgaactgatgagttctaagaagaaggatttgcaccct
cgggatattgacgcgttctggctgcagcgacagctcagtcgtttctatgatgatgccatt
gtgtcgcagaagaaggcagatgaggtgttggagattttgaagacagcaagtgatgaccga
gaatgtgagaaccagctggttctgctccttggcttcaacacttttgacttcatcaaagtg
ttgcggcagcacaggatgatgattttatactgtaccttattggccagtgctcagagtgaa
gctgaaaaggagaggatcatgggaaagatggaagctgatccagagctttccaaattcctc
tatcagctccatgaaactgagaaggaagacctgatcagggaagaaaggtcccggagagag
agagtccgtcagtcccgaatggacacagatctggaaaccatggatttggaccagggtgga
gaggctctggctccgaggcaggttctggatttggaggaccttgtttttactcaaggaagc
cacttcatggccaataagcgctgccagcttcccgacgggtctttccgacgccagcgtaag
ggctatgaagaggtgcacgtgcctgctttgaagcccaagccctttggctcagaagaacaa
ctgctcccagtggagaagctgccaaagtatgcccaggcaggatttgagggcttcaaaacg
ctgaaccggatccagagtaaactctaccgtgctgccctggagacagatgagaatctgctg
ctgtgtgctcctactggtgccggcaagaccaatgtggctctgatgtgtatgctccgagag
ataggaaaacacatcaacatggatggcactatcaacgtggatgacttcaagatcatctac
atagctcctatgcggtccctggtacaggagatggtgggcagctttggaaagcgcctggcc
acatatggcattactgttgctgagctgactggggatcatcaactatgcaaggaagaaatc
agtgccacacagatcattgtctgcacccctgagaagtgggacatcatcacacgcaagggc
ggggagcgcacctacacccagctggtgcggctcattgtcttggatgagatccatcttcta
catgatgacagaggtcctgtcttagaagctttggtggccagggccatccgaaacattgag
atgacccaagaagatgtccgactcattggtctcagcgctaccctccccaactatgaagat
gtggccacctttctgcgcgtcgaccctgctaagggcctcttctactttgacaacagcttc
cgcccagtgcctctggaacaaacatatgtgggcatcacagagaaaaaagctatcaaacgt
ttccagatcatgaatgaaatagtctatgagaaaatcatggagcatgctggaaaaaaccag
gtgctggtgtttgtccactctcgaaaagaaactgggaagacagcaagggcaatccgtgac
atgtgtctggagaaggacaccttgggtctgtttcttcgggagggttctgcctccactgaa
gtccttcgtacagaagcagaacagtgcaagaacttggaactgaaggatcttttgccctat
ggctttgctattcatcatgcaggcatgactagagttgaccgaacacttgtagaagatctt
tttgctgacaaacatattcaggttttagtttctactgcaactctggcttggggtgtaaat
cttcctgcacacacagtcatcattaaaggtacccaagtgtacagtccagagaaagggcgt
tggacagagctgggagcactggatattctgcagatgctgggccgtgctggacggccgcag
tatgacactaagggtgaaggtatactcatcacgtctcatggcgagctccagtactacctc
tccctcctcaaccagcagcttccaattgagagccagatggtatcaaagctgcctgacatg
ctcaatgcagaaattgtgctggggaacgtccagaatgcaaaggatgcagtgaactggctg
ggctatgcctacctatacatccgaatgctccggtcccctaccctctatggcatctctcat
gatgacctcaagggagatcccttgctggaccagcgccgactcgatcttgttcacactgct
gccttgatgcttgacaagaacaatctggtcaagtacgacaagaagacaggcaacttccag
gtgacagaacttggtcggatagcaagtcactactatatcaccaatgatactgtgcagaca
tacaatcagctgctgaagcctactctgagtgagattgagcttttccgagtgttctccttg
tcctcagagttcaagaacatcacagtgagagaggaggagaagctagaactgcagaagttg
cttgagagagtgcccatccctgtaaaggagagcattgaagaacccagtgctaagatcaat
gtgcttctccaagccttcatctcacagctgaaacttgaaggctttgcactgatggctgac
atggtgtacgtgacacagtcggctggccggttgatgcgtgcaatctttgaaattgtcctg
aatcgaggttgggcacagcttacagataagaccctgaatctctgcaagatgattgacaaa
cgcatgtggcagtccatgtgtcctcttcgccagttccgaaaacttcctgaggaagtagtg
aagaagattgagaagaagaacttcccctttgagcggctgtatgacttgaatcataatgag
ataggtgagcttattcgaatgccgaagatggggaagaccatccacaagtatgtccatctt
ttccccaagttggagttgtcggttcacctgcagcctattacacgctctacgctgaaagta
gagctgactatcacaccggatttccagtgggatgaaaaggtccatggttcgtcagaggca
ttttggattctggtggaggatgtggacagcgaggtgattctgcaccacgaatattttctc
ctgaaggccaaatatgcccaggatgagcacctcatcacgttctttgttccggtctttgaa
ccactacctcctcagtacttcattcgagtggtgtctgatcgctggctctcttgtgagacc
caactgcctgtctctttccggcacctgatcctaccagagaagtacccacctccaactgaa
ctgttggatctgcagccattgcctgtatctgctctgagaaacagtgcttttgagagcctt
taccaagataaatttcctttcttcaatcccatccagactcaagtgtttaataccgtgtac
aacagtgatgataacgtgtttgtgggggcccccacgggcagcgggaagactatttgtgca
gagtttgccatcttacggatgctgctgcagaattctgaggggcgctgtgtctacattacc
cctatggaggctctggcagagcaggtgtacatggactggtatgagaagtttcaggacagg
ctcaataagaaggtggtgctgctgacgggggagaccagcacagacctgaagctcctgggc
aaaggcaacatcatcatcagtactcctgagaagtgggacatcctctctcggaggtggaag
cagcgcaagaatgtccagaacattaacctctttgtggtggatgaggtccaccttattggg
ggcgagaatgggcctgtcttggaagtgatctgctcccggatgcgctacatctcctcccag
atcgagcggcccattcgcattgtggcacttagctcctcactctccaatgccaaggatgtg
gctcactggctgggctgtagtgccacctccaccttcaacttccaccctaatgtgcgccct
gtacctttggaactgcacatccagggcttcaacatcagtcacacacagactcgcctgctc
tctatggccaagcctgtgtaccatgctatcactaaacactcacccaagaagcctgtcatt
gtttttgtcccatctcgcaagcagacccgcctcactgccatagacatcctcactacctgt
gcagcagacatccagcggcagaggttcctgcactgtaccgagaaggatctgatcccttac
ctggagaagctaagtgacagcacactcaaagaaacattgttaaatggggtgggctaccta
catgaagggctgagtcccatggaaaggcgcctggtagagcagctcttcagctcaggggct
atccaggtagtggtggcttctcgaagtctctgctggggcatgaatgttgctgctcatctt
gtgatcatcatggacactcaatactacaatggcaagatccatgcctatgtggattaccca
atctatgatgtgcttcagatggtgggccatgccaaccgccccctgcaggatgacgagggg
cgctgtgtcatcatgtgtcagggctctaaaaaggattttttcaaaaagtttttatatgag
ccattgccggtagagtctcacctggaccactgtatgcatgaccacttcaatgctgagatt
gtcaccaagaccatcgagaacaagcaggatgccgtggactacctcacctggacctttctg
tatcgccgaatgacacagaaccccaattactacaacctgcaggggatatctcatcgtcat
ttgtctgaccatttgtcagagctggtggagcagacgctcagtgacctggagcagtccaag
tgcatcagtattgaggacgagatggatgtggcccctctgaacctgggcatgattgctgcc
tactattacataaactacaccaccatcgagctcttcagcatgtctctgaatgccaaaacc
aaggttcgagggcttatagagattatttccaatgcagcagagtatgagaacattcccatc
aggcatcacgaagacaacctcctgcgccagttggctcagaaggttccccacaagctgaat
aaccccaagttcaatgatccccatgtgaagaccaatctgttgctgcaggctcacctgtcc
cgcatgcagctaagtgctgaactacagtcagacacagaggagatcctaagtaaggcaatc
cggctcattcaggcctgtgtggatgtactctccagcaatgggtggcttagccctgctctg
gcagccatggaactggctcagatggtcacccaagccatgtggtctaaggactcttacctg
aagcagctgccacacttcacctcagagcatatcaaacgttgcacagataagggagtggag
agtgtttttgacatcatggagatggaggatgaagaacggaatgcattgcttcagttgact
gacagccagattgcagatgtggcccgcttctgtaaccgctacccgaatatcgaactgtcc
tatgaagtggtggataaagacagcatccgcagtggcgggccagtcgtggtgctggtgcaa
ctagagcgagaggaggaagtcaccggccctgttattgcacctctcttcccacagaaacgt
gaagagggctggtgggttgtgattggagacgccaagtccaacagcctcatctccatcaag
aggctgaccttgcagcagaaagccaaggtgaagctggactttgtggccccagccacaggc
ggccacaactataccctgtacttcatgagtgacgcttacatggggtgtgaccaggagtat
aaattcagcgtggacgtgaaagaagctgagacagacagtgactcagattga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (9)   
   RefSeq(nuc) (1)   
   GenBank (4)   
   EMBL (4)   
Protein domain (11)   
   Pfam (11)   
All databases (33)   

Download RDF
DBGET integrated database retrieval system