KEGG   Rattus norvegicus (rat): 296159
Entry
296159            CDS       T01003                                 
Symbol
Vps16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
  KO
K20180  vacuolar protein sorting-associated protein 16
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04140  Autophagy - animal
rno04148  Efferocytosis
rno05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    296159 (Vps16)
   04148 Efferocytosis
    296159 (Vps16)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    296159 (Vps16)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rno04131]
    296159 (Vps16)
Membrane trafficking [BR:rno04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    296159 (Vps16)
   Hops complex
    296159 (Vps16)
SSDB
Motif
Pfam: Vps16_N Vps16_C
Other DBs
NCBI-GeneID: 296159
NCBI-ProteinID: NP_001005541
RGD: 1359414
Ensembl: ENSRNOG00000021222
UniProt: A6HQ90 F7FA01
Position
3:138075649..138097154
AA seq 839 aa
MDCYTANWNPLGDSAFYRKYELYSMDWDLKEELKDCLVAAAPYGGPIALLRNCWRKEKAA
SVRPVLEMYSASGMPLASLLWKSGPVVALGWSAEEELLCVQEDGAVLVYGLHGDFRRHFS
MGNEVLQNRVLDARIFHTEFGSGVAILTGAYRFTLSANVGDLKLRRMPEVPGLQSAPSCW
TTLCHERVAHILLAVGPDLYLLDHATCSAVTPAGLAPGVSSFLQMAVSFTYRYLALFTDT
GYIWMGTASLKEKLCEFNCNIRAPPKQMVWCSRPRSKEKAVVVAWERRLMVVGNAPESIQ
FVLDEDSYLVPELDGVRIFSRSTHEFLHEVPVASEEIFKIASMAPGALLLEAQKEYEKES
QKADEYLREIQELGQLIQAVQQCIEAAGHEHQPDMQKRLLRAASFGKCFLDRFPPDSFVH
MCQDLRVLNAIRDYHIGIPLTYTQYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQG
VSRILAHWACYKVQQKDVSDEDVARAINQKLGDTPGVSYSDIAARAYGCGRAELAIKLLE
YEPRSGEQVPLLLKMKRSKLALSKAIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMA
LSLYRQFCKHQELDTLKDLYNQDDNHQELGSFHIRASYAAEERIEGRVAALQTAADAFYK
AKNEFAAKATEDQMRLLRLQRRLEDELGGRFLDLSLHDTVTTLILGGHNKRAEQLARDFR
IPDKRLWWLKLSALADLEEWEELEKFSKSKKSPIGYLPFVEICMKQHNKHEAKKYASRVG
PEQKVKALLLVGDVAQAADVAIEHRNETELSLVLSHCTGTTDGAIADKIQRARAQAQKK
NT seq 2520 nt   +upstreamnt  +downstreamnt
atggactgttacactgcgaactggaatccactcggggactctgccttttaccggaagtat
gaactgtacagcatggactgggacctgaaggaggagctcaaggattgtctggtggctgct
gcaccctatgggggccccattgctctactgaggaactgctggagaaaagagaaagctgcc
agtgtgcggccagtactggagatgtactctgcttctggcatgcccctggctagcctgctg
tggaagagtgggcctgtggtggccctcggctggtcagccgaggaggagctgctctgtgtg
caggaagatggtgcagtgctagtttatgggcttcatggagacttccggaggcacttcagc
atgggcaatgaagtgcttcagaaccgtgtcttggatgctcggatttttcacactgagttt
ggttctggggtggccatccttaccggagcctatcgatttactctgagtgctaatgtgggt
gacctcaaactccgtcggatgccagaggtgccaggtctgcagagtgcaccctcctgctgg
accacactgtgccacgagcgagtagcacacattcttctggctgtaggacctgatctttac
cttctggatcatgctacctgctctgcagtgacacctgctggtctagctccaggagtgagc
agcttcctacagatggctgtatccttcacgtaccgttacctggcactcttcacagacaca
ggctacatctggatggggacagcatcactcaaggagaagctgtgtgagttcaactgcaac
atccgggcacccccgaagcagatggtctggtgtagccgtcctcgaagcaaggaaaaggct
gttgttgtagcctgggaaaggcggctgatggtggtgggcaatgcgcctgaaagcattcag
tttgtgcttgatgaggactcctacttagtgcctgagcttgatggggtccgcatcttctct
cgaagtacccatgaattcctgcatgaagtcccagtggccagtgaagagatcttcaaaatt
gcctcaatggcccctggagcactgctgttggaggcacagaaggagtatgagaaagagagc
caaaaagcagatgaatatctgcgggagatccaggaactggggcagctgatccaggctgtg
cagcagtgcattgaggctgcaggacatgagcaccaaccagacatgcaaaagcgtctgctc
agggcggcttcgtttggaaagtgtttccttgacagatttccgcctgacagcttcgtgcac
atgtgtcaggaccttcgagtgctcaatgctattagggactaccacattgggatccctctg
acctatacccaatacaagcagcttaccatccaggtgctgctcgacaggctcgtgttgcgg
aggctttatcccctggctatccagatatgcgagtacctgcgccttcctgaagtacagggc
gtcagcaggatcctagcccactgggcctgctacaaggtgcagcagaaagatgtctcagat
gaggacgtagcacgggctattaatcagaagctgggtgacacgcctggtgtttcatactct
gacattgctgcaagggcctatggctgtggccgcgctgaactggccattaagctgctggag
tatgagccacggtcaggggaacaggtacctcttctcctgaagatgaagaggagcaaacta
gctctgagcaaggccattgagagtggagacactgacctggtgtttacagtgctgctgcac
ctgaagaatgaactcaaccgaggagactttttcatgactctgcggaaccaacccatggcc
ctgagtttgtatcgacagttctgtaagcatcaggaactagacactctgaaggacctttac
aatcaggacgacaatcaccaggaattgggcagcttccacatcagagccagctatgctgcg
gaagagcgtattgaagggcgagtggcagctctgcaaacggcagctgacgccttctacaaa
gccaagaatgaatttgcagccaaggctacagaggatcaaatgaggctcctgcggctacag
cgacgcctggaggatgagctagggggcaggttcctagacctatctctacatgacacagtc
accacgcttatcctcggaggacacaacaagcgggcagagcagctggcacgtgactttcgc
atccctgacaagaggctctggtggttaaagctgtctgccctggcagatctggaagagtgg
gaggagctggagaagttttctaagagcaagaaatcaccaattggctacctgccctttgta
gagatctgcatgaagcaacataacaaacatgaggccaagaagtatgcttccagagtgggc
cctgagcaaaaggtcaaggctttgcttcttgtcggggatgtggctcaggctgcagatgtg
gctattgagcaccggaatgaaactgagctgagcctcgttttgtcccactgcactggaact
acagatggggccatagctgacaagattcagcgggccagagcacaagcccagaagaaatga

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