KEGG   Rattus norvegicus (rat): 296732
Entry
296732            CDS       T01003                                 
Symbol
Smarcd3
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform 1
  KO
K11650  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03082  ATP-dependent chromatin remodeling
rno04714  Thermogenesis
rno05225  Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    296732 (Smarcd3)
 09150 Organismal Systems
  09159 Environmental adaptation
   04714 Thermogenesis
    296732 (Smarcd3)
 09160 Human Diseases
  09162 Cancer: specific types
   05225 Hepatocellular carcinoma
    296732 (Smarcd3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    296732 (Smarcd3)
   03036 Chromosome and associated proteins [BR:rno03036]
    296732 (Smarcd3)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     296732 (Smarcd3)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    296732 (Smarcd3)
   PBAF complex
    296732 (Smarcd3)
   GBAF(ncBAF) complex
    296732 (Smarcd3)
SSDB
Motif
Pfam: SWIB
Other DBs
NCBI-GeneID: 296732
NCBI-ProteinID: NP_001011966
RGD: 1311869
Ensembl: ENSRNOG00000010077
UniProt: F7FMF4 Q5U3Y2
Position
4:11441142..11472781
AA seq 470 aa
MSPGVQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAA
PPPGQSQAQGQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLD
QTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDD
PSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLL
LMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQ
IFDCPRLKFSEIPQRLTGLLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMS
SFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKV
MTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT
NT seq 1413 nt   +upstreamnt  +downstreamnt
atgagtccaggtgttcagcacccacccaccgtggtacagcgccccgggatgccgtctgga
gcccgaatgccccaccagggggcgcccatgggccccccgggctccccgtacatgggcagc
cccgcggtacgacccggcctggcccccgcgggcatggagcccgcccgcaagcgagcagcg
cccccgcccgggcagagccaggcacaaggccagggccagccggtgcccaccgccccagcg
cggagccgcagtgccaagaggaggaagatggctgacaaaatcctccctcaaaggattcgg
gagctggtccctgagtcccaggcttacatggacctcctagcatttgagaggaaactggat
caaaccattatgcggaagcgggtggacatccaggaggccctgaagaggcccatgaagcaa
aagcgaaagctgcgcctttatatctccaatacttttaaccccgcgaagcccgatgccgaa
gattctgatggcagcattgcctcctgggagctgcgggtggaggggaagctcttggatgat
cccagtaagcagaagaggaagttttcttccttcttcaagagtttggtcattgagttggac
aaagacctttatggcccagacaaccaccttgttgagtggcaccggacacccacaacccag
gagacagatgggttccaagtgaagagaccaggggacttgagtgtgcgctgtaccctgctc
ctgatgctggactatcagcctccccagttcaaactggacccccgcttggcccggctgctg
gggttgcatacgcagagccgctcagccattgtccaggcactgtggcagtacgtgaagacc
aacaggctacaggactcccatgacaaggaatacatcaatggagacaagtatttccagcag
atttttgactgtccccgcctgaagttttctgagattccccagcgtctcacaggcctgctg
cttcctcctgaccccattgtgatcaaccatgtcatcagcgtggacccatcagaccagaag
aagaccgcgtgctatgacattgatgtggaggtggaggaaccactgaaggggcagatgagc
agctttctcctgtccaccgccaaccagcaggagatcagtgctctggacagtaagatccat
gagaccattgagtccataaatcagctcaagatccagagggacttcatgctaagtttctcc
agagaccccaaaggctacgtccaagacctgctccgctcccagagccgtgatctcaaggtg
atgacagatgtggccggtaaccccgaggaagagcgccgggctgagttctaccaccagccc
tggtcccaggaagctgtcagccgctacttctactgtaagatccagcagcgcaggcaggag
ctggagcagtcactagttgtgcgcaacacctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (7)   
   UniProt (2)   
   RefSeq(pep) (5)   
DNA sequence (7)   
   RefSeq(nuc) (5)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (28)   

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