KEGG   Rattus norvegicus (rat): 29677
Entry
29677             CDS       T01003                                 
Symbol
Psmc3
Name
(RefSeq) 26S proteasome regulatory subunit 6A
  KO
K03065  26S proteasome regulatory subunit T5
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03050  Proteasome
rno05010  Alzheimer disease
rno05012  Parkinson disease
rno05014  Amyotrophic lateral sclerosis
rno05016  Huntington disease
rno05017  Spinocerebellar ataxia
rno05020  Prion disease
rno05022  Pathways of neurodegeneration - multiple diseases
rno05169  Epstein-Barr virus infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03050 Proteasome
    29677 (Psmc3)
 09160 Human Diseases
  09172 Infectious disease: viral
   05169 Epstein-Barr virus infection
    29677 (Psmc3)
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    29677 (Psmc3)
   05012 Parkinson disease
    29677 (Psmc3)
   05014 Amyotrophic lateral sclerosis
    29677 (Psmc3)
   05016 Huntington disease
    29677 (Psmc3)
   05017 Spinocerebellar ataxia
    29677 (Psmc3)
   05020 Prion disease
    29677 (Psmc3)
   05022 Pathways of neurodegeneration - multiple diseases
    29677 (Psmc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:rno03051]
    29677 (Psmc3)
Proteasome [BR:rno03051]
 Eukaryotic proteasome
  Regulatory particles
   PA700 (19S proteasome)
    ATPase subunits
     29677 (Psmc3)
SSDB
Motif
Pfam: AAA AAA_lid_3 Prot_ATP_ID_OB_C nSTAND3 AAA_5 AAA_16 RuvB_N AAA_2 AAA_22 DUF815 Mg_chelatase AAA_33 PhoH CCDC22_CC DUF5827 IstB_IS21 AAA_24 AAA_7 Sigma54_activat AAA_14 AAA_28 RNA_helicase ATPase AAA_11
Other DBs
NCBI-GeneID: 29677
NCBI-ProteinID: NP_113783
RGD: 61905
Ensembl: ENSRNOG00000011414
UniProt: Q63569 A6HNA2
Structure
Position
3:97487643..97493025
AA seq 442 aa
MQEMNLLPTPESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKS
EVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQR
KGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEV
DERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLA
RACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFD
SEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMP
NEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTH
EDYMEGILEVQAKKKANLQYYA
NT seq 1329 nt   +upstreamnt  +downstreamnt
atgcaggaaatgaatctgctgccgacgcccgagagtccagtgactcggcaggagaagatg
gcgaccgtgtgggatgaagctgagcaagatggcattggggaggaggtgctcaagatgtcc
acagaagagatcgtccagcgcacacggctgctagacagcgagatcaagatcatgaagagt
gaagtgctgcgagtcacccacgaactccaagccatgaaagacaaaatcaaagagaacagt
gagaaaatcaaagtgaacaaaaccctcccatacctagtctccaacgttattgagttgctg
gatgttgaccccaatgaccaggaggaggatggtgccaatattgacctggactcgcagagg
aagggcaagtgtgcagtgatcaaaacttctacccgacaaacgtacttcctgccagtgatt
gggttggtagatgccgaaaagctgaagccgggagacctggtgggtgtgaacaaagactcc
tatctgatcctggagaccctgcccaccgaatatgactctcgggtgaaggccatggaggtg
gacgagcggcccacagagcaatacagtgacattggcggcctggacaagcagatccaggag
ctggtggaagccattgtcctgcctatgaaccacaaagagaagtttgagaacttgggtatc
cagcccccaaaaggagtgctgatgtatgggccgcctggtacagggaagactctcctcgcc
cgagcctgtgctgctcagaccaaggccaccttcttgaagctggcaggccctcagctggtg
cagatgtttattggagatggcgccaagctggtccgtgatgcttttgccctggccaaggag
aaggcaccatctattatctttatagatgagttggatgccattggcaccaagcgcttcgac
agtgaaaaggcaggggaccgagaggtgcagaggaccatgctagagctcctgaaccagctg
gatggcttccagcccaacacccaagtgaaggtaattgcagccactaacagggtggacatc
ctggaccctgccctgctccgctcaggacgcctagaccgcaagattgagtttccaatgccc
aatgaggaggcccgagccagaattatgcagatccactcacggaagatgaacgtcagtcct
gatgtgaactatgaagagctggctcgctgcactgatgacttcaatggggcccagtgcaag
gccgtgtgtgtggaggcgggtatgatcgcactgcgcaggggtgccacggagctcactcac
gaggactacatggagggcatcctggaggtgcaggccaagaagaaagccaacctgcagtac
tatgcctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (9)   
   KEGG PATHWAY (9)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (20)   
   RefSeq(nuc) (2)   
   GenBank (9)   
   EMBL (9)   
3D Structure (4)   
   PDB (4)   
Protein domain (24)   
   Pfam (24)   
All databases (71)   

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