KEGG   Rattus norvegicus (rat): 296913
Entry
296913            CDS       T01003                                 
Symbol
Lsm8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03018  RNA degradation
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    296913 (Lsm8)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    296913 (Lsm8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    296913 (Lsm8)
   03041 Spliceosome [BR:rno03041]
    296913 (Lsm8)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     296913 (Lsm8)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     296913 (Lsm8)
Spliceosome [BR:rno03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    296913 (Lsm8)
SSDB
Motif
Pfam: LSM DUF150_C
Other DBs
NCBI-GeneID: 296913
NCBI-ProteinID: NP_001100055
RGD: 1308442
Ensembl: ENSRNOG00000070946
UniProt: A6IE42 A0A8I5ZNK7
Position
4:48272128..48277994
AA seq 96 aa
MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH
NT seq 291 nt   +upstreamnt  +downstreamnt
atgacgtctgccttggagaactacatcaaccgaactgttgcagtaataacttctgatggc
agaatgatcgtgggaaccctgaaaggttttgaccagaccattaacttgattctggatgaa
agccacgagcgggtgttcagctcttctcagggagtagaacaagtggtattggggttatac
attgtgagaggagataatgtagcagtcattggggaaatagatgaagagacagattctgca
ctcgacttggggaacatccgagcagaacctctgaactccgtagcacactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (2)   
   Pfam (2)   
All databases (24)   

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