KEGG   Rattus norvegicus (rat): 29744
Entry
29744             CDS       T01003                                 
Symbol
Sema6c
Name
(RefSeq) semaphorin-6C precursor
  KO
K06842  semaphorin 6
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04360  Axon guidance
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09158 Development and regeneration
   04360 Axon guidance
    29744 (Sema6c)
SSDB
Motif
Pfam: Sema PSI
Other DBs
NCBI-GeneID: 29744
NCBI-ProteinID: NP_059004
RGD: 3659
Ensembl: ENSRNOG00000021101
UniProt: Q9WTL3 A6K2V3
Position
2:185422636..185436237
AA seq 960 aa
MPRAPHSMPLLLLLLLSLPQAQTAFPQDPIPLLTSDLQGTSPSSWFRGLEDDAVAAELGL
DFQRFLTLNRTLLVAARDHVFSFDLQAQEEGEGLVPNKFLTWRSQDMENCAVRGKLTDEC
YNYIRVLVPWDSQTLLACGTNSFSPVCRSYGITSLQQEGEELSGQARCPFDATQSTVAIS
AEGSLYSATAADFQASDAVVYRSLGPQPPLRSAKYDSKWLREPHFVYALEHGDHVYFFFR
EVSVEDARLGRVQFSRVARVCKRDMGGSPRALDRHWTSFLKLRLNCSVPGDSTFYFDVLQ
SLTGPVNLHGRSALFGVFTTQTNSIPGSAVCAFYLDDIERGFEGKFKEQRSLDGAWTPVS
EDKVPSPRPGSCAGVGAAALFSSSQDLPDDVLLFIKAHPLLDPAVPPATHQPLLTLTSRA
LLTQVAVDGMAGPHRNTTVLFLGSNDGTVLKVLPPGGQSLGPEPIILEEIDAYSHARCSG
KRSPRAARRIIGLELDTEGHRLFVAFPGCIVYLSLSRCARHGACQRSCLASLDPYCGWHR
FRGCVNIRGPGGTDVDLTGNQESMEHGDCQDGATGSQSGPGDSAYVLLGPGPSPETPSSP
SDAHPGPQSSTLGAHTQGVRRDLSPASASRSIPIPLLLACVAAAFALGASVSGLLVSCAC
RRANRRRSKDIETPGLPRPLSLRSLARLHGGGPEPPPPPKDGDAAQTPQLYTTFLPPPEG
GSPPELACLPTPETTPELPVKHLRASGGPWEWNQNGNNASEGPGRPRGCSAAGGPAPRVL
VRPPPPGCPGQEVEVTTLEELLRYLHGPQPPRKGSEPLASAPFTSRPPASEPGAALFVDS
SPMPRDCVPPLRLDVPPDGKRAAPSGRPALSAPAPRLGVSGSRRLPFPTHRAPPGLLTRV
PSGGPSRYSGGPGRHLLYLGRPDGHRGRSLKRVDVKSPLSPKPPLATPPQPAPHGSHFNF
NT seq 2883 nt   +upstreamnt  +downstreamnt
atgccccgtgccccccactccatgcccttgctgctgctgttgctgctgtcactcccccaa
gcccagactgcctttccccaggaccccatccctctgttgacctctgacctacaaggtacc
tctccgtcatcctggttccggggcctggaggacgatgctgtggctgcggaacttgggctg
gactttcagagattcctgaccttgaaccggaccttgcttgtggctgcccgggatcacgtt
ttctccttcgatcttcaagcccaagaagaaggggaggggctggtgcccaacaagtttctg
acatggcggagccaagacatggagaattgtgctgtccggggaaagctgacggacgaatgc
tacaactacatccgtgttcttgttccctgggactcgcagacactccttgcctgtggaaca
aattccttcagccctgtgtgtcgcagctatgggataacatctctgcaacaggagggtgag
gagctgagtgggcaagctcgatgcccctttgatgccacccagtccactgtggccatctct
gcagagggtagtttgtactcagccacagcagcagatttccaggccagtgatgctgtggtt
tacagaagccttggacctcagcccccactccgttctgcaaagtatgactccaagtggctt
cgagagccacactttgtctatgctttggagcatggagaccatgtctacttcttcttccga
gaagtctctgtggaggacgcccgcctggggagggtgcagttttcccgggtggcccgggtg
tgtaaacgtgacatgggtggctcaccacgggccttggatcgccactggacatccttcctt
aagctgaggctcaactgctccgtccctggggactctaccttctactttgatgtcttacag
tccttaactgggcctgtgaacctgcatgggcgctctgccctctttggggtcttcactact
cagaccaatagcattcctgggtctgcagtctgcgccttctacctagatgacattgaacgt
ggctttgagggcaagttcaaggagcagaggagtctggatggggcctggactcctgtgtct
gaggacaaagtcccctcacccaggccagggtcctgtgcaggtgtgggtgcagctgcctta
ttctcctcctctcaagacctgcctgacgatgtcctgctcttcatcaaggcacacccactg
ctggatcccgctgtgccacctgccacccatcaacctctcctcactctgactagcagggct
ctactgacccaggtagctgtggatggtatggctggcccccacagaaatactacagtcctg
tttcttggctccaatgatgggacagtgctgaaggtgctacctccagggggacagtctctg
ggacccgagcctatcatattggaagagattgatgcctacagccatgcccggtgcagtggg
aagcggtcaccccgagctgctcgacggatcatagggctggagctggacactgagggtcac
aggctttttgtggcctttcctggatgcatcgtctacctctctctcagccgctgtgcccgg
catggagcatgtcagaggagctgcctggcttctctggacccatactgtggatggcatcgg
ttccgaggctgtgtgaatatcaggggacctggagggactgatgtggatctgactgggaac
caggaatccatggagcatggtgactgccaagatggagcgactgggagtcagtctggccct
ggagattctgcctatgtgcttctgggtcctggcccttcccctgagacccccagttccccc
agtgatgcccacccagggccccagtcttccactcttggagctcacactcagggcgtgcgc
agggacctttccccagcctcagcctcccgatccatccccatcccactcctcctggcctgt
gtggcggcggccttcgctttgggcgcctcagtctccggcctcttggtgtcctgtgcttgt
cgtcgcgcgaaccgccgtcggagcaaggacatcgagaccccggggctgccgcgccccctc
tcccttcgcagtctggcgaggctgcacggtggcggtcctgagcccccgcctccgcccaag
gatggtgatgcagcgcaaacgccccagctctacactaccttcctgcctccgcccgagggc
ggatccccaccggagctggcctgcctgcccaccccggagaccacgcccgagctgccggtg
aagcacctccgtgcctccgggggtccctgggagtggaaccagaacgggaacaacgcttcg
gagggcccaggccgcccacggggctgcagcgcggcgggcgggcccgccccgcgcgtgctg
gtgaggccaccgccccctggctgccccgggcaggaggtggaggtgaccacgctggaggaa
ctgctgcgctacctgcacggcccgcagccgcccaggaagggcagcgaacctctcgcctcc
gccccgttcacctcccggccgcctgcctcggagcccggcgccgccttgttcgtggactcc
agcccgatgcctcgtgattgcgtgccgccgctgaggctcgacgtaccgcccgacggcaag
cgcgcggccccgagcgggcggcctgctctctcggccccggctccacgcctgggcgtcagc
ggcagccgaagattgcccttccccacgcaccgggcgcccccgggcctgctcacccgagtc
ccctcgggaggcccgtccaggtactccggggggcccgggaggcacctcctgtacctgggc
cggcccgacggccaccgcggccgctccctgaagagggtggacgtgaagtctccactgtcg
cccaaaccgcccctcgccacaccgccgcagcccgccccgcacggcagccattttaacttc
tga

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Ontology (1)   
   KEGG BRITE (1)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (18)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (15)   
DNA sequence (21)   
   RefSeq(nuc) (15)   
   GenBank (3)   
   EMBL (3)   
Protein domain (2)   
   Pfam (2)   
All databases (50)   

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