KEGG   Rattus norvegicus (rat): 297522
Entry
297522            CDS       T01003                                 
Symbol
Sec13
Name
(RefSeq) protein SEC13 homolog
  KO
K14004  protein transport protein SEC13
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03013  Nucleocytoplasmic transport
rno04141  Protein processing in endoplasmic reticulum
rno04150  mTOR signaling pathway
rno05014  Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    297522 (Sec13)
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    297522 (Sec13)
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    297522 (Sec13)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    297522 (Sec13)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    297522 (Sec13)
   04131 Membrane trafficking [BR:rno04131]
    297522 (Sec13)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     297522 (Sec13)
Membrane trafficking [BR:rno04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    297522 (Sec13)
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    297522 (Sec13)
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    297522 (Sec13)
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 NBCH_WD40
Other DBs
NCBI-GeneID: 297522
NCBI-ProteinID: NP_001006979
RGD: 1359555
Ensembl: ENSRNOG00000010628
UniProt: Q5XFW8 A6IBU1
Position
4:complement(148433344..148446735)
AA seq 322 aa
MVSVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPV
WQVAWAHPMYGNILASCSYDRKVIIWKEENGTWEKTHEHSGHDSSVNSVCWAPHDYGLIL
ACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIK
KFASGGCDNLIKLWREEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV
FIWTCDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCI
SDVNKGQGSVSASITEGQQNEQ
NT seq 969 nt   +upstreamnt  +downstreamnt
atggtgtcagtaattaacactgtggatacctctcatgaggacatgattcatgatgcgcag
atggactattatggcacccgcctagcaacctgctcctcagataggtctgtcaaaattttt
gatgtgcgaaatggagggcagatcctcatcgcagacctcagaggacatgaggggccagtg
tggcaggtggcctgggctcaccccatgtatggcaatatcctggcttcctgttcctatgac
cggaaagtcattatctggaaggaggaaaatggcacttgggaaaagacccatgagcactca
ggacatgactcctcagtgaactctgtttgctgggcccctcatgactatggcctgatcctg
gcctgtgggagttcagatggtgccatctcgctgctgacttatacaggggaaggccagtgg
gaagtgaagaagattaacaatgctcacacgattggctgtaatgctgtcagttgggcccca
gctgttgtgcctggaagccttatagaccaaccatccggacagaaacccaattacatcaag
aagtttgcatcaggtggctgtgacaatctcatcaagttgtggagggaagaggaggatggc
cagtggaaggaggagcaaaagctagaggcacacagtgactgggttcgagacgttgcctgg
gccccctccattggcttgcccaccagcaccattgccagctgctctcaggatgggcgagtg
tttatttggacttgtgatgacgcctcaggcaatatgtggtcacctaaactcctacacaag
ttcaatgatgtcgtgtggcacgtgagctggtccatcacagcaaatatcctggctgtgtca
ggtggagacaataaggtgaccctgtggaaagagtcggtggatggacagtgggtgtgcatc
agtgatgtcaacaagggccagggttctgtgtcagcctccatcacagagggccaacagaat
gagcaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (3)   
   Pfam (3)   
All databases (28)   

Download RDF
DBGET integrated database retrieval system