KEGG   Rattus norvegicus (rat): 297593
Entry
297593            CDS       T01003                                 
Symbol
Usp5
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 5 isoform 1
  KO
K11836  ubiquitin carboxyl-terminal hydrolase 5/13 [EC:3.4.19.12]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:rno01002]
    297593 (Usp5)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rno04121]
    297593 (Usp5)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rno04147]
    297593 (Usp5)
Enzymes [BR:rno01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     297593 (Usp5)
Peptidases and inhibitors [BR:rno01002]
 Cysteine peptidases
  Family C19: ubiquitin-specific protease family
   297593 (Usp5)
Ubiquitin system [BR:rno04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    297593 (Usp5)
Exosome [BR:rno04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   297593 (Usp5)
SSDB
Motif
Pfam: UCH zf-UBP_var UBA zf-UBP UCH_1 UBA_4 UBA_3
Other DBs
NCBI-GeneID: 297593
NCBI-ProteinID: NP_001100089
RGD: 1308438
Ensembl: ENSRNOG00000015409
UniProt: A6ILL7 D3ZVQ0
Position
4:complement(159305927..159321345)
AA seq 858 aa
MAELSEEALLSVLPTIRVPKAGDRVHKDECAFSFDTPESEGGLYICMNTFLGFGKQYVER
HFNKTGQRVYLHLRRTRRPKEEDSSAGTGDPPRKKPTRLAIGVEGGFDLTEDKFEYDEDV
KIVILPDYLEIARDGLGGLPDIVRDRVTSAVEALLSADSASRKQEVQAWDGEVRQVSKHA
FNLKQLDNPARIPPCGWRCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRET
GYPLAVKLGTITPDGADVYSYDEDDMVLDPSLAEHLSHFGIDMLKMQKTDKTMTELEIDM
NQRIGEWELIQESGVPLKPLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEK
IFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPALESGDGEQVPEQKEVQDGIAPRMFKAL
IGKGHPEFSTNRQQDAQEFFLHLINMVERNCRSSENPNEVFRFLVEEKIKCLATEKVKYT
QRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKVALPELVRAQVPFSSCLEAYGAPE
QVDDFWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDIS
QLRGTGLQPGEEELPDIAPPLVTPDEPKGSLGFYGNEDEDSFCSPHFSSPTSPMLDESVV
IQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAAA
DPPPEDCVATIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSA
ADSISESVPVGPKVRDGPGKYQLFAFISHMGTSTMCGHYVCHIKKEGRWVIYNDQKVCAS
EKPPKDLGYIYFYQRVVS
NT seq 2577 nt   +upstreamnt  +downstreamnt
atggcggagctgagtgaggaggcgctgctgtcagtgttaccgacgatccgtgtccccaag
gcgggagaccgggtccacaaagacgagtgtgctttctctttcgacaccccggaatctgag
ggtggcctttatatctgcatgaacacattcctgggatttgggaaacagtatgtggagaga
catttcaacaagacaggccagcgtgtctacctgcaccttcggaggacccggcgaccgaaa
gaagaggactccagcgcaggcactggagacccaccccggaagaagcccacccggctggcc
attggtgttgaaggtgggtttgacctcaccgaggacaagtttgaatatgatgaggacgtg
aagattgtcattttgccagattacctggagatcgctcgggatgggttgggggggcttccc
gacattgtcagagatcgggtgaccagtgcagtggaagccctactttcggctgattcagcc
tctcggaagcaggaggtacaggcttgggatggggaagtccgtcaggtgtctaagcatgcc
ttcaacctcaagcagttggacaaccccgctcggatccctccctgtggctggaggtgctcc
aagtgtgacatgagagagaacctgtggctcaacctgacagatggctccatcctgtgcggc
cggcgctactttgatggcagcgggggcaacaaccatgctgtggagcactacagggagact
ggctaccccttagctgttaagctgggcaccatcacacccgatggagctgatgtgtactct
tacgacgaggatgacatggtcctggaccctagcctggcagagcacctgtctcactttggc
atcgacatgctgaagatgcagaagacggacaaaacaatgactgagctggagatagacatg
aaccagcggattggtgagtgggagctgatccaggagtcaggcgtgccactcaagcctctc
ttcgggcctgggtacacaggcatccggaacctgggtaacagctgctacctcaactccgtg
gtccaggtgctcttcagcatccctgactttcagaggaagtatgtggataaattggagaag
atcttccagaatgccccaacggaccctacccaagacttcagcacccaggtggcgaagctg
gggcacggccttctctctggagaatattctaagccagcactggagtcaggtgatggggag
caggtaccagaacaaaaggaagttcaagatggcattgcccctcggatgttcaaggccctt
attggcaagggccaccctgagttctccactaaccggcagcaggatgctcaggaattcttc
ctacatcttatcaacatggtggagaggaattgccggagttctgaaaatccaaatgaagtg
ttccgcttcttggtggaagagaagatcaagtgcctggccacagagaaggttaagtacact
cagcgagttgactacatcatgcagttgcctgtgcccatggatgcagcccttaacaaagag
gagcttctagagtatgaagagaagaagcggcaagcagaagaggagaaagtagcactgcca
gagctggttcgggcccaggtgcccttcagctcctgcctggaagcctatggggcccccgag
caggtggatgacttctggagtacagctctacaggcgaagtcggttgctgtcaagactaca
cggtttgcctccttccctgactacctggtcatccagatcaagaagttcacctttggctta
gactgggtgcccaagaagctggatgtgtccattgagatgccagaggagctagatatttcc
cagctgaggggcacagggctacagcccggagaggaggagctgcctgacattgccccaccc
ctggtcactccggatgagcccaaaggtagccttggtttctatggcaacgaagacgaagac
tccttctgctcccctcacttctcctctccaacatcgcccatgctggacgagtccgtcgtc
atacagttggtggagatgggcttccctatggacgcctgccggaaagccgtgtactataca
gggaacagtggtgctgaagcagccatgaactgggtcatgtcacacatggatgacccagat
tttgccaatcccctcatcctgcctgggtccagtgggcctggctccacaagtgcagcagcc
gatcccccaccagaggactgtgtggccaccattgtctccatgggcttctcacgggaccag
gccctgaaagctctacgggccacgaacaatagcttagagcgggctgtagactggatcttc
agtcacattgatgacctagatgcagaagctgctatggacatctcagagggacgctcagct
gctgactccatctctgagtctgtaccagtgggacctaaagtccgggatggtcctggaaag
tatcagctctttgccttcattagtcacatgggcacgtctactatgtgtggtcactatgtc
tgccatatcaagaaggaaggcagatgggtgatctacaatgaccagaaagtgtgtgcctcg
gaaaagccacccaaggacctgggctacatctacttctaccagagagtggtcagctaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (2)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (30)   

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