KEGG   Rattus norvegicus (rat): 298012
Entry
298012            CDS       T01003                                 
Symbol
Rad23b
Name
(RefSeq) UV excision repair protein RAD23 homolog B
  KO
K10839  UV excision repair protein RAD23
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03420  Nucleotide excision repair
rno04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    298012 (Rad23b)
  09124 Replication and repair
   03420 Nucleotide excision repair
    298012 (Rad23b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:rno03051]
    298012 (Rad23b)
   03400 DNA repair and recombination proteins [BR:rno03400]
    298012 (Rad23b)
Proteasome [BR:rno03051]
 Eukaryotic proteasome
  Proteasome interacting proteins (PIPs)
   UBL-UBA shuttle proteins
    298012 (Rad23b)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      298012 (Rad23b)
SSDB
Motif
Pfam: UBA XPC-binding ubiquitin Rad60-SLD Rad60-SLD_2 Crinkler UBA_3 Dsc3_N UBA_2 DUF1421
Other DBs
NCBI-GeneID: 298012
NCBI-ProteinID: NP_001020446
RGD: 1562958
Ensembl: ENSRNOG00000016137
UniProt: Q4KMA2 A6KDQ3
Position
5:74885518..74923621
AA seq 415 aa
MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK
EYKIDEKNFVVVMVTKPKAVTSAVPATTQQSSSPSTTTVSSSPAAAVAQAPAPTPALAPT
STPASTTPASTTASSEPAPTGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDA
TSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVD
PPPQAVSTGTPQSPAVAAAAATTTATTTTTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLP
ALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGGGIAEAGS
GHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFDED
NT seq 1248 nt   +upstreamnt  +downstreamnt
atgcaggtcaccctgaagacccttcagcagcagaccttcaagatcgacatcgacccggag
gagacggtaaaggcattgaaagagaagattgaatctgagaaggggaaagatgcctttccg
gtagcaggtcagaagttaatttatgcaggcaaaatcctcagtgatgatactgctctcaaa
gaatataaaattgatgagaaaaactttgtggtggttatggtgacaaagcccaaagcagtg
acatcagcagtgccagctacaacccagcaatcaagttctcccagcaccactacagtcagc
tcctcccctgcagcagctgtggcccaggctccagctcccacccctgctctggctcccact
tccacacctgcctccacgactccagcctcaactacagcatcttctgaacctgcacctact
ggtgcaactcagcccgagaaacctgcagaaaagccagcacagacaccagtgcttactagc
ccagcaccagctgacagtacaccaggagattcttctcggtcaaatctttttgaagatgca
acaagtgcccttgtgacaggtcagtcttacgagaatatggtaactgagatcatgtcaatg
ggctatgaacgagaacaagtaattgcagccctgagagccagcttcaacaaccctgataga
gctgtggaatatcttctaatgggaatccctggagacagagaaagtcaggccgtggttgat
cctcctccacaggctgtgagtactggaactcctcagtctccagcagtagctgcagctgca
gcaaccacaacagcaacgacaaccaccacttctggaggccacccccttgagtttttacgg
aatcagcctcagtttcaacagatgagacaaattatccagcagaacccctccttgcttcct
gctttgctacagcagataggccgggagaaccctcagttgctgcagcaaattagccaacac
caggagcattttattcagatgctaaatgaaccggttcaggaagctggtggtcaaggtgga
ggaggaggtggtggaggtggtggaggtggaggcggtggaggaattgcagaagctggcagt
ggtcacatgaactacatccaagtaacacctcaggagaaagaagctatagaacggttaaag
gcattaggatttcctgaaggacttgtgattcaagcatactttgcttgtgagaagaacgag
aatctggcggccaactttcttctacagcagaactttgatgaagactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (9)   
   RefSeq(nuc) (1)   
   GenBank (4)   
   EMBL (4)   
Protein domain (10)   
   Pfam (10)   
All databases (35)   

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