KEGG   Rattus norvegicus (rat): 298095
Entry
298095            CDS       T01003                                 
Symbol
Prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    298095 (Prpf4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rno03041]
    298095 (Prpf4)
Spliceosome [BR:rno03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    298095 (Prpf4)
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 PRP4 NBCH_WD40 WD40_like Ge1_WD40
Other DBs
NCBI-GeneID: 298095
NCBI-ProteinID: NP_001100129
RGD: 1311303
Ensembl: ENSRNOG00000014777
UniProt: D4A7J8 A6J7U4
Position
5:80875511..80889501
AA seq 521 aa
MASSRASSTTTKTKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIE
AGNINITSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITL
FGEGPAERRERLRNILSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWI
ANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSP
NSKMLATACWSGLCKLWSVPDCSLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAA
DGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQ
EGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGISFSPNGYH
IATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGDFLLTGAYDNTAKIWTHPG
WSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE
NT seq 1566 nt   +upstreamnt  +downstreamnt
atggcctcctcacgagcctcctccacgacaaccaaaactaaagcacctgacgatttagtt
gctcctgttgtgaagaaaccacacatctattatggaagcttggaagagaaagagcgggaa
cgcctggccaaaggagagtctgggattttgggaaaagaaggactcaaagccggcattgaa
gcaggaaatattaatataacgtctggagaagtctttgaaattgaggagcacatcagtgag
cggcaggctgaagtcttggcagagtttgaaagaagaaagcgagcccggcaaatcaatgtt
tccacggatgactcagaggtcaaggcttgccttagagccttgggagaaccgatcacactt
tttggagagggccctgctgaacgaagagaaaggttaagaaatattctctcagtggttggg
actgatgccttaaaaaagacaaaaaaagatgatgaaaaatctaagaagtcaaaagaagag
tatcagcaaacctggtaccatgaagggccaaatagcctgaaggtggccagattgtggatt
gccaattattcactccccagggcaatgaaacgcttggaggaggcccgtctccataaggag
attcccgagaccaccagaacctcccagatgcaggagctgcacaagtctctccggtctttg
aataatttctgcagtcagattggagatgaccggccaatctcctactgtcacttcagcccc
aattctaaaatgctagccacagcttgttggagtgggctctgcaagctctggtctgtccct
gactgcagcctccttcacactcttcgaggccataatacaaatgtcggagcaattgtattc
catcccaaatccactgtctccttggaccaaaaagatgtcaacctggcctcttgtgctgct
gatggctctgtgaagctttggagtcttgacagtgatgagccagtggcagatattgaaggc
catacagtccgtgtggctcgggtaatgtggcatccgtcagggcgtttcctgggcacaacc
tgttatgaccgttcatggcgcttatgggatttagaggctcaagaggagattctacaccag
gaaggccacagcatgggtgtgtatgacattgccttccatcaagatggctctttggctggc
actgggggactggatgcctttggccgagtttgggacctacgcacaggacgctgcattatg
ttcctagaaggccatctgaaggagatctacgggataagtttctcccccaatggctaccac
attgccactggcagtggtgacaacacctgcaaggtgtgggatcttcgacagcgacgctgt
gtctacaccatccccgcccatcagaacttagtgactggtgtcaagtttgagcctatccat
ggggacttcttgctcacgggtgcctatgacaacacagccaagatctggacccacccaggc
tggtccccactgaagactctggctgggcatgagggcaaagtgatgggcctagacatttct
tctgatgggcagctcatagccacttgctcatatgacagaaccttcaagctctggatggca
gagtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (6)   
   Pfam (6)   
All databases (26)   

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