KEGG   Rattus norvegicus (rat): 298101
Entry
298101            CDS       T01003                                 
Symbol
Col27a1
Name
(RefSeq) collagen alpha-1(XXVII) chain precursor
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04974  Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    298101 (Col27a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:rno00536]
    298101 (Col27a1)
Glycosaminoglycan binding proteins [BR:rno00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   298101 (Col27a1)
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2
Other DBs
NCBI-GeneID: 298101
NCBI-ProteinID: NP_001398788
RGD: 735115
Ensembl: ENSRNOG00000007657
UniProt: Q80ZF0
Position
5:81662822..81781502
AA seq 1846 aa
MGTGSARGARGTAATGCGGGFLFAWILVSFSCHLASTQGAPEDVDVLQRLGLSWTKAGGG
RSPAPPGVIPFPSGFIFTQRAKLQAPTTNVLPTTLGRELALVLSLCSHRVNHAFLFAIRS
RKHRLQLGLQFLPGRTLVHLGPRQSVAFDLDVHDGRWHHLALELRGRTVTLVTACGQHRV
PVPLPSRRDSMLDPQGSFLLGKMNPRAVQFEGALCQFSIHPVAQVAHNYCAHLRERCRQV
DTYGPQVGALFPWDSGPAFALHPEPALLGLGNLTRNPATLGSRPISRGLMVTMAPAVPTK
PLRMVHQDVSKLGSSQTPLVPAKQSARKTPSPFPSAALANSTRVFHSAPAQPRQITATSP
TKRPPTKPSVSSLSVTPMKSPQAIQKAGTPSFSRPIPTTQKPTPLTSHPSPSKVSSATVR
PVQKTFMTPQPPTLSPQALHPITGLPKKFTIPTVAKPQSKMTSWASKPVLARTNVPKALE
QTVVAQSSVSYLGSQTLATALPPLGVGNSRMMPSTRDSTSTPAGSKKITGLEASKKTRHK
SSPRKPIPLSSGKTARDASPRDLTTKPSQLSTPALVLAPAHLLSSSPQPTSSSFSFFHLP
EPTPFLMLMGPPGSKGDCGLPGPPGLPGLPGSPGPRGPRGPPGPFGNPGLPGPPGAKGQK
GDPGLSPGQAHDGAKGNMGLPGLAGNPGPMGRKGHKGHPGAAGHPGEQGQPGPEGSPGAK
GYPGRQGFPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGIPGKRGEMGRPGFPGDF
GERGPPGLDGNPGEIGLPGPPGVLGLLGDMGALGPVGYPGPKGMKGLMGGVGEPGLKGDK
GEQGVPGVSGDPGFQGDKGSHGLPGFPGARGKPGPMGKAGDKGSLGLPGPPGPEGFPGDI
GPPGDNGPEGMKGKPGARGLPGPPGQLGPEGDEGPMGPPGVPGLEGQPGRKGFPGRPGLD
GSKGEPGDPGRPGPVGEQGLMGFVGLVGEPGIVGEKGDRGVMGPPGAPGPKGSMGHPGTP
GGVGDPGEPGPWGPPGSRGLPGMRGAKGHRGPRGPDGPAGEQGSKGLKGRVGPRGRPGQP
GQQGAAGERGHSGAKGFLGIPGPSGPPGAKGLPGEPGSQGPQGPVGPPGEMGPKGPPGAV
GEPGLPGDSGMKGDLGPLGPPGEQGLIGQRGEPGLEGDLGPVGPDGLKGDRGDPGPDGEH
GEKGQEGLKGEEGLPGPPGITGVRGREGKPGSQGEKGQRGAKGAKGYQGQLGEMGIPGDP
GPPGTPGPKGSRGTLGPMGAPGRMGAQGEPGLAGYNGHKGITGPLGPPGPKGEKGEQGED
GKTEGAPGPPGERGPVGDRGDRGEPGDPGYPGQEGVQGLRGEPGQQGQPGHPGPRGRPGP
KGSKGEEGPKGKPGKAGASGRRGTQGLQGLPGPRGVVGRQGPEGMAGQDGNPGRDGRPGY
QGEQGNDGDPGPVGPAGRRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGGTGL
PGNQGEPGSKGQPGDSGEMGFPGVAGLFGPKGPPGDIGFKGIQGPRGPPGLMGKEGIIGP
PGMLGPSGLPGPKGDRGSRGDWGLQGPRGPPGPRGRPGPPGPPWHPVQFQQDDLEAAFQT
WMDAHGAVRLEQGYSYPDQLMLDQGGEIFKTLHYLSNLIQSIKTPLGTKENPARVCRDLM
DCEQKMADGIYWVDPNLGCSSDTIEVSCNFTHGGQTCLKPITASKAEFAVSRVQMNFLHL
LSSEGTQHITIHCLNMTVWQEGPARPSARQAVRFRAWNGQVFEAGGQFRPEVSMDGCKVH
DGRWHQTLFTFRTQDPQQLPIVSVDNLPPVSSGKQYRLEVGPACFL
NT seq 5541 nt   +upstreamnt  +downstreamnt
atgggcacgggatcggcgaggggggcccgaggcacagcggcgacaggatgcgggggggga
tttctcttcgcctggatcttggtctcattttcctgtcatctggcctccacccaaggagct
cctgaagatgtggatgtcctccagcggctgggcctcagctggacgaaagctgggggtggc
cggagccccgcaccccctggtgtcattcctttcccatctggcttcatcttcacacagcgg
gccaagctgcaggcccctactaccaatgtccttcccaccaccctggggcgggagctggca
ttggtgttgagcctctgttcgcaccgtgtgaaccatgccttcctcttcgccatccgcagc
aggaaacacaggctgcagctgggtctgcagttcctccccggcaggactctcgtccacctg
ggacctcggcaatctgtggccttcgacttggatgtgcatgatgggcgctggcaccacctg
gccctagagttgcgtggtcgcacggtcacattggtgacagcctgtgggcagcacagggta
cctgttccgctgccttcccgtagggactccatgcttgacccccagggctcctttctcttg
gggaagatgaacccccgagctgtccagtttgaaggtgcactctgtcagttcagcatccat
cccgtggcgcaggtcgctcacaattactgtgcccacctgagagaacggtgccgacaggtg
gacacgtatggtccccaggtgggagccctctttccctgggactctggcccagcctttgct
ttgcatcctgaaccagccttgcttggtctggggaacctgaccagaaacccagcaacccta
gggtccaggcctataagcaggggactcatggtgactatggctcctgccgtgcccaccaag
cccctaaggatggtccaccaagatgtctccaaactcggctcttctcagaccccattggtc
cctgccaaacagtcagccagaaaaacaccttcccccttcccttcagctgctctggctaat
tccaccagggtttttcactcagctcctgcccagccacgacaaatcacagctactagcccc
accaaacgtcccccgaccaagccttctgtttcttccctttcagttacccccatgaaaagt
ccccaggcaatccagaaagcaggtaccccttcattctcaaggcccattccaaccacccag
aagccaacacccctcacctcccacccatcaccctccaaagtctctagtgccactgtgagg
cctgtccagaagactttcatgacaccccaacctccaaccctgagtccccaagccctgcac
cctattactggcttacctaagaagttcactatccccacagtagcaaaacctcagtccaag
atgaccagttgggccagcaagccagtcttggcccgcaccaatgtccctaaggctcttgag
caaactgttgtggcccagtcctctgtttcctatctgggctctcagacactggctacagcc
ctccctcctctgggtgttggaaattctagaatgatgccttccacacgtgactctacttca
actcctgctggaagcaagaaaatcacaggattggaagcttccaagaaaaccagacataag
agcagcccccggaagcccatacctctcagctctgggaagacagccagggatgcttcacca
agagacctgacaaccaagcctagccagctgtccactccagccctggtccttgccccagcc
cacctcctgtcctccagcccccagcccaccagcagcagcttttctttcttccacctgccg
gaacctacacctttcctgatgctgatggggcctcctggctccaagggagactgtggcttg
ccgggccctcctgggcttccaggattacctggatctccgggtccacgaggtcctcggggt
cctcctgggccatttgggaacccaggtctacctggacctcctggagccaaaggacagaaa
ggggacccgggactctcaccaggacaggctcacgatggggcaaagggcaacatgggcttg
cctgggctcgccggaaatccaggacccatgggacggaagggacacaagggccaccctgga
gcggcagggcaccctggagaacaggggcagccaggacctgagggcagtccaggggccaaa
ggttaccctggcaggcaggggttccctggacctgtaggagaccctggccccaaaggcagc
aggggttacattgggcttccggggctctttggcctgccagggtcggatggagagcggggt
ctccccggcattcctggcaagaggggcgagatgggtaggccgggcttccctggagacttt
ggggaaagaggtccccctggacttgatgggaaccctggggaaattggcctgccaggacca
ccaggagtgctcgggctccttggtgacatgggagcattaggtccagttggctacccggga
ccaaaaggcatgaagggactgatgggcggcgtgggggagcccggactgaaaggtgataag
ggtgaacaaggggtgccaggtgtatcgggagatcctggcttccaaggagacaaggggagt
catggcttgccagggttcccaggtgcccgggggaagccagggcctatgggcaaagctggg
gacaaaggctcacttgggcttcctggacctcctggtcctgagggtttcccaggagacatt
ggccccccaggggacaatggccctgaaggcatgaagggtaagcctggagcccgaggccta
cctggacctcctgggcagctggggcctgagggagatgaaggacccatggggccaccagga
gtcccaggcttggagggtcaacctggaaggaaggggttcccggggaggcctggcctggac
ggctcgaagggggaaccaggggatcctggacggccagggcctgtgggtgaacaggggctt
atgggatttgttggtctggttggagagcctggaattgttggggagaagggagaccgtgga
gtgatgggacccccaggggcacctggacccaaggggtcgatgggccatcctggaacacct
ggtggtgttggggaccctggagagcctggaccctggggccctccaggatctcgaggactg
ccaggcatgaggggagccaaggggcaccggggccctcgaggacctgatggaccagctggg
gagcaggggtccaagggcctgaagggtcgtgtagggcctcggggcagacctggccagcca
ggacagcagggtgcagctggcgagcgaggccactcaggtgcaaaaggcttccttggcatt
cctggtccctcaggccctccaggtgccaagggcctcccaggagaaccgggctctcaggga
cctcaggggccagttggtcctccaggagagatgggacccaaggggccgcctggtgcagtg
ggagaacctggccttcctggggactccggtatgaagggtgaccttggacctctgggccct
cctggggaacaagggctcattgggcaacggggagagccaggcctcgagggagaccttggc
ccagtggggccagatgggctgaagggggacaggggtgacccaggtcctgatggtgaacat
ggtgaaaagggtcaggaaggactgaaaggagaggaggggctccctgggcccccaggcatc
actggtgtccggggtcgtgaagggaagcctggcagtcagggtgagaagggccagagggga
gctaagggtgccaagggctaccaaggacagctgggagagatgggcatccctggagaccct
ggcccccctggcaccccaggtcctaaagggtcccggggcaccctaggaccaatgggtgct
ccaggacggatgggagcccaaggagaaccaggattggctggttataatgggcataaaggc
atcacgggacctctcgggcctcccgggcccaaaggcgagaagggggaacagggcgaggat
ggcaagactgagggggcccccgggccaccaggagagcggggtcctgtgggtgatcgagga
gaccgtggggagccaggcgaccctggataccctggtcaagagggtgttcaaggcctccgt
ggagaaccaggccagcagggccagcccgggcatccaggaccccggggacgcccaggaccc
aaaggatcaaaaggcgaagagggcccaaagggaaagccaggcaaggcgggggcatcaggc
cggagggggacccaggggcttcaagggctgccagggccgagaggtgtagtagggagacag
ggccctgagggcatggctggacaagatgggaatcctggcagggacggtcggccaggatat
cagggagagcagggaaatgatggggaccctggccccgtgggccctgctgggagaagaggg
aatccaggtgtggctggcttgcctggagcacaggggcctccaggattcaagggtgaaagt
gggttacctgggcaactgggtccccctggaaaacgagggacagaaggtggaacggggctt
cctgggaaccagggggagccaggatccaaaggccagccgggtgactctggcgagatgggc
ttcccaggagtggctggcctctttggacccaagggtccccctggagacattggcttcaaa
ggcatccaaggccctcggggtcctcctggcttgatgggaaaggaaggtatcattgggccc
cccggaatgctgggaccttctggactcccgggtcccaaaggtgacagaggcagccgaggg
gactggggactgcaaggcccaaggggtcctcctggtccgagggggcggccaggtccaccg
ggccctccttggcatcctgtccagtttcaacaagatgaccttgaggcagctttccaaacg
tggatggatgctcacggagcagtcagattggagcaggggtacagctatccggaccagctg
atgctagaccagggaggggagatcttcaaaaccttacactacctcagcaacctcatccag
agcattaagacgcccttgggcaccaaggagaacccagcccgggtctgccgggacctcatg
gactgcgaacagaagatggcggatggtatctactgggtggaccccaacctcggctgctcc
tctgataccatcgaagtctcctgcaactttacacatggtgggcagacttgcctgaagcct
atcacggcctccaaggcagagtttgctgttagtcgggtccagatgaatttcttgcacctg
ctcagctctgaggggacacagcacatcacaatccactgcctgaacatgacggtgtggcag
gagggacctgcacgcccctctgccaggcaagctgtgcgcttccgtgcctggaacggacag
gtctttgaagctgggggtcaattcaggccagaggtgtctatggatggctgcaaggtccat
gatggccgctggcatcagacactattcaccttccggacccaggacccccagcagctgccc
attgtcagtgtggacaaccttccacctgtctcgtcagggaagcagtaccgcctggaagtt
ggacctgcatgcttcctctga

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