KEGG   Rattus norvegicus (rat): 298374
Entry
298374            CDS       T01003                                 
Symbol
Prpf38a
Name
(RefSeq) pre-mRNA-splicing factor 38A
  KO
K12849  pre-mRNA-splicing factor 38A
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    298374 (Prpf38a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rno03041]
    298374 (Prpf38a)
Spliceosome [BR:rno03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    298374 (Prpf38a)
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    298374 (Prpf38a)
SSDB
Motif
Pfam: PRP38 PRP38_assoc
Other DBs
NCBI-GeneID: 298374
NCBI-ProteinID: NP_001100142
RGD: 1311129
Ensembl: ENSRNOG00000009451
UniProt: A6JYV1
Position
5:complement(128541166..128552865)
AA seq 312 aa
MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKFVGGV
YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL
EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR
VSALEEDMDDVESSEEEEEEDEKLERVPSPDHRRRSYRDLDKPRRSPALRYRRSRSRSPR
RRSRSPKRRSPSPRRERHRSKSPRRHRSRSRDRRHRSRSKSPGHHRSHRHRSHSKSPERS
KKSHKKSRRGNE
NT seq 939 nt   +upstreamnt  +downstreamnt
atggcgaaccgtacagtgaaggatgcccacagcatccatggcaccaatcctcagtatctg
gtggagaagatcatccggacacgaatttatgaatcaaagtactggaaagaagagtgtttt
ggacttacagctgaacttgtagtcgacaaagccatggagttgaagtttgtgggtggtgtg
tatggtggaaacataaagccaactccatttctatgtttaaccttgaagatgcttcagatt
caacctgaaaaagatatcattgttgagttcataaaaaatgaagatttcaagtatgtccgg
atgttaggggccctttatatgaggctgacaggaactgcaattgattgctacaagtacttg
gagcctttgtacaatgactaccgaaaaatcaagagccagaacagaaatggagagtttgaa
ctgatgcatgtagatgagttcattgatgaactactgcacagtgagcgagtctgtgatatc
attttgcctcggctacagaaacggtatgtgctggaggaagctgagcagctggagcctcga
gtcagcgctctagaagaggacatggatgacgtggagtctagtgaggaagaagaggaggaa
gatgagaagttggaaagagtaccatcacctgaccaccgacgaagaagctaccgagacttg
gacaagccaagacgctcacctgcactgcgctacaggaggagccggagccgttctcccaga
aggcggagtagatctcctaaaagaagaagtccttctcctcgacgagaaaggcataggagc
aagagtccacgacgccatcgaagcaggtccagagacagacgacacagatcccgctctaaa
tccccaggtcaccaccgtagtcacagacatagaagccactcaaagtctcctgaaaggtct
aaaaagagccacaagaagagccggagaggaaatgagtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (17)   

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