KEGG   Rattus norvegicus (rat): 298510
Entry
298510            CDS       T01003                                 
Symbol
Pabpc4
Name
(RefSeq) polyadenylate-binding protein 4
  KO
K13126  polyadenylate-binding protein
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03015  mRNA surveillance pathway
rno03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    298510 (Pabpc4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    298510 (Pabpc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    298510 (Pabpc4)
   03041 Spliceosome [BR:rno03041]
    298510 (Pabpc4)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     298510 (Pabpc4)
   mRNA cycle factors
    Stress granule specific factors
     298510 (Pabpc4)
Spliceosome [BR:rno03041]
 Complex C
  Other components
   Complex C specific factors
    298510 (Pabpc4)
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_occluded RRM_7 RRM_3 ApbA_C
Other DBs
NCBI-GeneID: 298510
NCBI-ProteinID: NP_001094008
RGD: 1305015
Ensembl: ENSRNOG00000015642
UniProt: A0A8J8XGC4
Position
5:140847835..140864089
AA seq 644 aa
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEK
HEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSALRQSGPRPALRHLAPTGSECPDRLAMDF
GGAGAAQQGLTDSCQSGGVPTAVPNLAPRATVAAAAPRAVAPYKYASNVRSPHPAIQPLQ
APQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNS
ELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGTVAAATS
NT seq 1935 nt   +upstreamnt  +downstreamnt
atgaacgctgcggccagcagctaccccatggcctccttatacgtgggcgatctgcactcc
gatgtcaccgaagccatgctgtatgaaaagttcagccctgcggggcctgtgctgtccatc
cgggtctgccgcgatatgatcacccgccgctctctgggttatgcctacgtcaacttccag
cagccagctgacgctgagagggccttggacaccatgaactttgatgtgattaaggggaag
ccaatccggatcatgtggtctcagagggacccctctttgaggaagtctggtgtgggaaat
gtcttcatcaagaacctggacaagtctatagacaacaaggcactgtatgacactttctct
gccttcggaaacatcctgtcctgtaaggtggtctgtgatgagaacggctctaagggttat
gcctttgtccacttcgagacccaagaggctgccaacaaggccatcgagaagatgaatggc
atgctcctcaatgaccgcaaagtgttcgtgggcagattcaagtctcgcaaagagcgggaa
gccgagcttggagccaaggccaaggaattcaccaatgtttatatcaaaaactttggagaa
gaggtggatgatgagaatctgagggagctattcagccagtttggtaagaccttaagtgtc
aaggtgatgagagactgcagtgggaagtccaaaggcttcggcttcgtgagctatgagaaa
catgaggatgccaataaggctgtggaagaaatgaatggaaaagaaatgagtgggaaatcc
atatttgtaggccgtgctcagaaaaaagtagaacgtcaggcggagttaaaacggaaattc
gaacagctgaagcaggagaggattagtcggtaccagggagtgaatctctacattaagaac
ttggatgacaccattgacgatgagaagttaaggaaagagttctcaccctttggatcaatc
accagtgcgaaggtgatgctggaagacgggagaagcaaagggtttggctttgtctgtttc
tcctctcctgaagaggcaaccaaagcggtcacggagatgaacggacgcattgtgggctcc
aagcctctgtacgtcgccctggcccagaggaaggaggagcggaaggctcacctgactaac
cagtatatgcagcgtgtggcaggaatgagagcgctccctgccaacgccatcttaaatcag
ttccagcctgcagctggtggctactttgtgccggcagtgccacaggcccagggaagacct
ccatattacacacctaatcaattagcgcaaatgaggcctaatccacgctggcagcaaggc
gggagacctcaaggcttccaaggaatgccaagtgccctgcggcaatctgggcctcgtcca
gctcttcggcatctggctccaactgggtctgagtgcccggaccgcttggctatggacttt
ggtggggctggtgccgcccagcaagggctgactgacagctgccagtctggaggcgtccct
acggctgtgccaaaccttgcacctcgtgctacagtcgctgctgctgctcccagggctgtg
gctccatacaagtatgcctccaatgtccgcagccctcaccctgccattcagccgctgcag
gccccccagcctgcagtccatgtccagggtcaagaacccctgactgcctccatgctggct
gcagctcctccccaggagcagaagcagatgctgggggagcgtttgttcccacttatccaa
acaatgcattcaaacctggctggaaaaattacagggatgctgctagaaatcgacaactct
gagctgctccacatgctggagtcccccgagtccctccgttccaaggtggatgaagctgtg
gcagtcctgcaggctcatcatgccaagaaagaagctgcccagaaggtgggcactgttgct
gctgctacctcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (10)   
   UniProt (1)   
   RefSeq(pep) (9)   
DNA sequence (15)   
   RefSeq(nuc) (9)   
   GenBank (3)   
   EMBL (3)   
Protein domain (7)   
   Pfam (7)   
All databases (44)   

Download RDF
DBGET integrated database retrieval system