KEGG   Rattus norvegicus (rat): 298916
Entry
298916            CDS       T01003                                 
Symbol
Cpsf3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
  KO
K14403  cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    298916 (Cpsf3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    298916 (Cpsf3)
   03019 Messenger RNA biogenesis [BR:rno03019]
    298916 (Cpsf3)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     298916 (Cpsf3)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     298916 (Cpsf3)
    U7-dependent histone pre-mRNA processing factors
     298916 (Cpsf3)
SSDB
Motif
Pfam: CPSF73-100_C Beta-Casp Lactamase_B_6 Lactamase_B RMMBL Lactamase_B_2 Lactamase_B_3 Beta_lactamase3
Other DBs
NCBI-GeneID: 298916
NCBI-ProteinID: NP_001025201
RGD: 1305767
Ensembl: ENSRNOG00000052418
UniProt: Q499P4
Position
6:46564855..46592776
AA seq 685 aa
MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID
PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD
MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGMKLLYTGDF
SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV
FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ
NPFVFKHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVE
GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE
QNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQR
VSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFYLLYYQLQKLTGDVEEL
EIQEKPALKVFKSITVVQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQK
VSKKLEMHVYSKRLEVMLQDIFGEDCVSVKDDSVLSVTVDGKTANINLETRAVECEEGSE
DDESLREMVELAAQRLYEALTPPVH
NT seq 2058 nt   +upstreamnt  +downstreamnt
atgtctgcaattcctgcagaggagagcgaccagctgctgatccgaccccttggtgctggc
caagaagtgggaagatcatgtattattctggagttcaaaggaaggaaaatcatgctagac
tgtgggatccaccctggcctggaaggaatggatgctcttccttacattgacctcatcgac
ccagctgagatcgaccttctgttgatcagtcacttccatttggaccactgtggagccctg
ccctggttccttcagaagacaagtttcaaaggacggacgtttatgacccacgccacaaaa
gctatctatagatggctcctctcagactatgtcaaagtcagcaacatatcagcagatgac
atgctgtacactgagacagacttggaagaaagcatggacaaaatcgaaaccatcaatttc
catgaagttaaggaagttgcaggaatcaagttctggtgttaccatgccggccacgtcctg
ggagcagccatgtttatgatagagattgctggtatgaagcttttgtatacaggtgatttc
tcaagacaagaggacagacatctaatggccgctgaaattcctaatattaagccagacatc
ctgatcattgaatctacgtatgggacccatatccatgagaagcgtgaagagcgagaagca
agattctgcaacactgtgcacgacattgtcaacagagggggcagagggctcattcctgtc
tttgctctcggaagagctcaggagctgctcctgattctagatgagtactggcagaaccac
ccagagctgcacgacatccccatttactacgcatcgtctctggccaagaagtgcatggcc
gtgtaccagacctacgtgaacgccatgaacgacaagatccggaagcagatcaacatcaac
aaccccttcgttttcaagcacatcagcaacctcaagagcatggatcactttgacgacatt
ggccccagtgttgtaatggcctcaccaggcatgattcaaaatggcttatccagagagctg
tttgaaagctggtgtacagataagaggaatggcgtcatcatcgcagggtactgtgtagaa
gggacacttgccaagcacatcatgtctgaacctgaagaaatcactaccatgtctggacag
aagttgccactgaaaatgtcggttgattacatttctttctctgctcacacagattaccag
caaaccagtgaatttattcgtgctctgaagccgcctcacgtgattttagtccatggggaa
cagaatgaaatggccagactgaaagcagcactgatccgagaatatgaagataacgatgaa
gttcacatcgaggttcacaatcctcggaacacagaggccgtgaccctgaacttcagaggg
gagaagctcgccaaggtcatgggctttttagcagacaagaagccagaacagggccagcgg
gtctctggaattcttgttaaaagaaactttaattaccacatactctctccctgtgacctc
tcgaattacactgacctggccatgagcactgtgaaacagacccaagccatcccatatact
gggcccttttacctgctctattaccagctacagaaattgacgggtgatgtagaagaatta
gaaattcaagaaaagcctgctttgaaggtattcaaaagcatcaccgtggtgcaggagccg
ggcatggtggtcctggagtggctggcgaacccctctaacgacatgtatgcagacacagtg
accaccgtgatattggaagttcagtcgaatccaaaaataaggaaaggtgcagtgcagaag
gtctctaagaagctagagatgcacgtttacagcaagaggcttgaggtcatgctccaggac
atatttggagaagactgtgtcagtgtgaaagatgactctgtcctcagtgtcacggtggat
ggaaaaacagcaaatattaatttggagactcgggctgtagaatgtgaagaaggaagtgag
gatgatgagtccctccgagaaatggtggaactggccgcccagagactgtacgaggctctg
acgccgccagtgcactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (8)   
   Pfam (8)   
All databases (28)   

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