KEGG   Rattus norvegicus (rat): 299196
Entry
299196            CDS       T01003                                 
Symbol
Abcd4
Name
(RefSeq) lysosomal cobalamin transporter ABCD4
  KO
K05678  ATP-binding cassette, subfamily D (ALD), member 4 [EC:7.6.2.8]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno02010  ABC transporters
rno04146  Peroxisome
rno04977  Vitamin digestion and absorption
rno04980  Cobalamin transport and metabolism
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   02010 ABC transporters
    299196 (Abcd4)
 09140 Cellular Processes
  09141 Transport and catabolism
   04146 Peroxisome
    299196 (Abcd4)
 09150 Organismal Systems
  09154 Digestive system
   04977 Vitamin digestion and absorption
    299196 (Abcd4)
   04980 Cobalamin transport and metabolism
    299196 (Abcd4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:rno02000]
    299196 (Abcd4)
Enzymes [BR:rno01000]
 7. Translocases
  7.6  Catalysing the translocation of other compounds
   7.6.2  Linked to the hydrolysis of a nucleoside triphosphate
    7.6.2.8  ABC-type vitamin B12 transporter
     299196 (Abcd4)
Transporters [BR:rno02000]
 ABC transporters, eukaryotic type
  ABCD (ALD) subfamily
   ABCD4 subgroup
    299196 (Abcd4)
SSDB
Motif
Pfam: ABC_membrane_2 ABC_tran AAA_30 AAA_16 AAA_22 DEAD DLIC AAA_29 T2SSE nSTAND3 AAA_7 AAA_19 AAA_23 ATP-synt_ab CoV_E
Other DBs
NCBI-GeneID: 299196
NCBI-ProteinID: NP_001013118
RGD: 1307273
Ensembl: ENSRNOG00000011964
UniProt: A6JDX5
Position
6:complement(109977541..109992050)
AA seq 606 aa
MAVPGPTARASARPRLDLQLVQKFIRIQKVFFPSWSSQNVLMFMTLLCVALLEQLVIYQV
GLIPSQYYGVLGNKDLDGFKALTFLAVALIVLNSTLKSFDQFTCNLLYVSWRKDLTEHLH
QLYFRARVYYTLNVLRDDIDNPDQRISQDVERFCRQLSSVTSKLIISPFTLAYYTYQCFQ
STGWLGPVSIFGYFILGTMVNKTLMGPIVTKLVQQEKLEGDFRFKHMQIRVNAEPAAFYR
AGLVEHMRTDRRLQRLLQTQRELMSRELWLYIGINTFDYLGSILSYVVIAIPIFRGVYGD
LSPTELSTLVSKNAFVCIYLISCFTQLIDLSTTLSDVAGYTHRIGELQEALLDMSRKSHD
CETLGESEWDLDKAPGWPTTEPSDTAFLLDRVSILAPSSDKPLIKDLSLKICEGQSLLIT
GNTGTGKTSLLRVLGGLWESMKGSVQMLADFGPHGVLFLPQKPFFTDGTLREQVIYPLKE
IYPDSGSADDERIVRFLELAGLSSLVARTGGLDQQVDWNWYDVLSPGEMQRLSFARLFYL
QPKYAVLDEATSALTEEAESELYRIGQQLGMTFISVGHRPSLEKFHSWVLRLHGGGSWEL
TRIKMG
NT seq 1821 nt   +upstreamnt  +downstreamnt
atggcggtcccgggacccacggcccgagctagtgccaggcccagattagatctgcaactt
gtccagaagttcataaggatacagaaggttttctttccttcttggtcatcacagaatgtc
ttaatgttcatgacactcttgtgtgtggccctcctggagcaactggtgatctaccaagtt
ggcttgatccccagtcagtattatggtgtcttgggaaacaaagacctggatggatttaag
gcactgaccttcctggccgtggcactcattgttctcaactccaccctgaagagttttgac
cagttcacctgcaacctgctgtatgtgagctggaggaaagacctcacagagcacctgcac
cagctctacttccgggcccgcgtgtactacaccctcaacgtgctgcgggacgacatcgat
aatccggaccagcggatcagccaggacgtggagcggttctgccggcagctcagcagcgtg
accagcaagctcatcatctcccccttcactctcgcctactatacctaccagtgcttccaa
agcacaggctggcttgggcctgtgagcatctttggatatttcatcctgggtaccatggtg
aacaaaactttgatggggcccatcgtgacgaagctggtgcagcaggagaagctggagggg
gattttaggttcaagcatatgcagattcgagtgaacgctgagcctgcagctttctacaga
gctgggctcgtagagcacatgaggacggaccgcaggctgcagagactccttcagacccag
agagagctgatgtccagggagctctggctctacattggcatcaacacctttgactacctg
ggcagcattctgagttacgtcgtcatcgccatccccattttcaggggggtctacggagac
ttgagccccacagagctcagcaccctggtcagcaagaatgcctttgtgtgcatctacctc
atcagctgcttcacccagctcattgacctgtccaccacgctctcggatgtcgccggttac
acgcacaggattggagagcttcaggaggccctgctggacatgtcccgaaaatcacacgac
tgtgagaccctaggcgagagcgagtgggatttggacaaggccccagggtggccgacaaca
gagccatcagacactgcttttctgcttgatcgggtctccatcttggccccttcctccgac
aagcccctgatcaaggacttgagcctgaagatctgtgaggggcagagtctgctcattacg
ggcaacacaggcactggcaagacctccctgctgcgggtgctgggaggcctgtgggagagc
atgaaaggctcagtgcagatgctggctgattttgggccccacggggtgctgttcctgcct
cagaagccgttcttcactgatgggacacttcgggagcaggtgatatatcccctgaaggag
atctaccctgactcaggttctgccgatgatgagaggatcgtgaggttcttggagttggca
ggcctgtccagcttggtggcaagaacaggaggtctggaccagcaggtggattggaactgg
tatgatgtcctgtccccaggggagatgcaaagactgtccttcgcccgcctcttctacctg
cagcctaagtatgcagtgcttgatgaagccaccagtgccctgacagaggaagcggagagt
gagctctaccgaattggccagcaactggggatgacatttatcagcgtgggacatcggccc
agccttgagaagtttcactcctgggttctgagactccatggaggaggaagctgggaactg
actagaatcaaaatgggatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (17)   
   RefSeq(nuc) (9)   
   GenBank (4)   
   EMBL (4)   
Protein domain (15)   
   Pfam (15)   
All databases (53)   

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