KEGG   Rattus norvegicus (rat): 299256
Entry
299256            CDS       T01003                                 
Symbol
Cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
  KO
K14402  cleavage and polyadenylation specificity factor subunit 2
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    299256 (Cpsf2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    299256 (Cpsf2)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     299256 (Cpsf2)
    U7-dependent histone pre-mRNA processing factors
     299256 (Cpsf2)
SSDB
Motif
Pfam: Lactamase_B_6 CPSF100_C Beta-Casp RMMBL Lactamase_B Lactamase_B_2 Beta_lactamase3
Other DBs
NCBI-GeneID: 299256
NCBI-ProteinID: NP_001100223
RGD: 1309687
Ensembl: ENSRNOG00000005733
UniProt: D3Z9E6 A6JEJ7
Position
6:126885417..126917634
AA seq 782 aa
MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRKHVHQIDAVLL
SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTT
PGTLARFLIDNPSEKVTEIELRKRVKLEGKELEEYVEKEKLKKEAAKKLEQSKEADIDSS
DESDVEEDVDQPTAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII
KPEDFLVPELQATEEEKSKLESGLTNGEEPMDQDLSDVPTKCVSATESIEIKARVTYIDY
EGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDS
EMQVDAPSDSSVIAQQKAMKSLFGDDEKELGEESEVIPTLEPLPPHEVPGHQSVFMNEPR
LSDFKQVLLREGIQAEFVGGVLVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYA
IV
NT seq 2349 nt   +upstreamnt  +downstreamnt
atgacatctatcatcaagttaactaccctctctggggtccaagaggagtctgctctttgc
tatcttctccaggttgatgagtttagatttttgttggactgtggctgggatgaacacttc
tctgtggacattattgattccctgaggaagcatgttcaccagatcgatgcagtgctcctg
tctcaccccgacccactccacctcggtgccctcccgttcgctgtggggaagctgggtctg
aactgtgccatctatgcaacaattcctgtttataaaatgggccagatgttcatgtacgat
ctttatcagtctcgacacaatacagaagattttaccctctttacattggacgatgtggat
gcagcctttgataaaatacagcagctaaaattctctcagatcgtgaacctgaaaggcaaa
ggacacggtttgtcgatcacacccctgccagctggtcatatgataggaggaacaatatgg
aaaatagtcaaagacggagaagaagagattgtttatgccgtggacttcaaccacaagagg
gagattcacctaaatggatgttccctggaaatgctaagcagaccctctctgcttatcaca
gattcatttaatgctacttatgtgcagcctagaaggaaacagagagacgagcagctcctg
acaaacgtcctggaaactcttcggggcgatgggaatgtgctcatagccgtggacacagca
ggcagagttctggagcttgctcaacttcttgatcagatttggagaactaaagacgcgggg
ttgggcgtttattcgctggctctcctgaacaacgtcagttacaacgtggtggagttctct
aagtcacaggtagaatggatgagtgataaattgatgagatgttttgaagacaagagaaat
aacccatttcagtttcgccatctctctctgtgccacggtctttctgacttggctcgggtt
ccaagccccaaagttgtacttgccagtcagcctgacctggagtgtggattctcaagggac
ctctttattcagtggtgtcaggaccctaaaaactcaatcatcctaacttacaggacaact
ccgggaaccttagcacgtttcttaattgataatccttctgagaaagttacagaaatagag
ctgaggaaacgcgtgaagcttgaagggaaagaacttgaggaatatgtggaaaaagagaaa
ctaaagaaagaagctgctaagaaactggagcagtcgaaagaggcagacatcgactccagt
gacgagagtgacgtggaggaagacgtcgaccagccaacagctcacaaaacgaagcacgac
ctgatgatgaagggggaaggcagccgaaaagggagcttcttcaaacaggccaaaaagtcc
taccccatgtttcctgccccagaagaaaggattaaatgggacgagtatggagagatcatc
aaaccagaagatttcttagtgccagaacttcaggctactgaagaagagaaaagcaaatta
gaatccggcttgacaaatggagaggaacccatggatcaggacctgtctgatgttcccacc
aagtgtgtttctgcaacagagtctattgagataaaagccagagttacttacatagactac
gaaggacgctccgatggagactccattaaaaagatcatcaatcagatgaaaccacggcag
ctgatcattgtccacggcccaccagaggccagtcaggatctggctgagtgctgccgcgca
tttggtgggaaagatatcaaagtgtacatgccaaagctgcacgagacagtcgatgccacc
agcgagacacatatctaccaggtaagattaaaggactcacttgtcagctcgcttcagttc
tgtaaagcgaaagatgctgagttagcatggatagacggcgtcttagacatgagagtctcc
aaagtggacacgggagttattttagaagaaggagaactcaaggatgatggagaagactct
gaaatgcaagtggatgctccttcagattccagtgtcatagcccagcagaaggccatgaaa
agtctgtttggagatgatgagaaagagctgggtgaggagagtgaggtcatccccacactg
gagcctttgccacctcatgaggttcccggacaccagtcagtttttatgaatgaaccgaga
ctgtctgacttcaagcaagttcttttgcgggaagggattcaagcggaatttgtagggggc
gtacttgtctgcaacaatcaagtagcagtccgcagaacagaaactggacgcatcgggcta
gaaggctgcctttgtcaagacttttataggatacgagaccttttatatgaacagtatgcc
attgtgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (7)   
   UniProt (2)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (7)   
   Pfam (7)   
All databases (29)   

Download RDF
DBGET integrated database retrieval system