KEGG   Rattus norvegicus (rat): 299343
Entry
299343            CDS       T01003                                 
Symbol
Tdrd9
Name
(RefSeq) ATP-dependent RNA helicase TDRD9
  KO
K18408  ATP-dependent RNA helicase TDRD9 [EC:3.6.4.13]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    299343 (Tdrd9)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    299343 (Tdrd9)
SSDB
Motif
Pfam: TUDOR Helicase_C DEAD HA2_C nSTAND3 AAA_22 FtsK_SpoIIIE HA2_N T2SSE AAA_19 AAA_29 AAA_23
Other DBs
NCBI-GeneID: 299343
NCBI-ProteinID: NP_001406506
RGD: 1306942
Ensembl: ENSRNOG00000053631
Position
6:136850797..136966225
AA seq 1384 aa
MLRKLTVDQINDWFTIGKTVTNVELLGLPPAFPAEAPREEVQRSEEVPSEAPTAQAQDPV
KATALARPASAFGRSLSQRSSEVEYINKYRQLEAQELDIYGQDQPPSGPGLRSPLAKISN
VACIPETTYKYPDLPINRCKEEVISLIESNSVVIIHGATGSGKSTQLPQYVLDHYTQRSA
FCNIVVTQPRKIGASSIARWISKERSWTLGGLVGYQVGLEKTATEDTRLIYMTTGVLLQK
IVSAKSLMEFTHVFIDEVHERTEEMDFLLLVVRKLLRTNSRFVKVILMSATINCKQFADY
FAVPVQNKMNPAYVFEVEGKPHTIEQYYLNDLGHIYHSGLPPYRLEEPVITKDVYEVAVS
LIQMFDDLDMKESGNKTWSGAQFVSERSSVLVFLPGLGEINYMHELLTNMIHKRLQVYPL
HSSVTLEEQNNVFLSPVPGYRKIILSTNIAESSVTVPDVKYVIDFCLTRTLVCDEDTNYQ
SLRLSWASKTSCDQRKGRAGRVSKGYCYRLIHRDFWDSAIPDHVVPEMLRCPLGSTVLKV
KLLDMGEPRALLATALSPPSLSDIERTILLLKEVGALAVSGQREDENPHDGELTFLGRVL
AQLPVSQQLGKLIVLGHVFGCLDECLIIAAALSLKNFFTMPFRQHLDGYRNKVHFSGSSR
SDCLALVEAFRAWQACRQRGELRHPKDELDWGRLNYIQIKRIREVAELYEELKNRISQFN
MFVDPRHPVLDQEYPYKQRFILQVVLAGAFYPNYFTFGQPDEEMAVRELAGRDPKTTVVL
KHIPPYGFLYYKQLQSLFRQCGQVKSIVFDGAKAFVEFSRNPTERFKTLPAVNLAVKMSQ
LKVSLELSIHAAEEIEGKVQGGSVSKLRNTRVNVDFQKQTVDPMQVSFNTLDRPRTVADL
LLTVDVTEVVEVGHFWGYRIDERNAELLRQLTAEINRLELVPLPIHPHPDLVCLAPFTDY
NKESYFRAQILYVSGNSAEVFFVDYGNRSHVDLDLLREIPCQLLELPFQALEFKICKMRP
SAKSLICGEHWSGGANGRFAALVSGCPLLVKVFSIVHSVLHVDVYRYSGAQDAVNIRDVL
IREGYAELAEESYESKQSYEVLKGFFAKSVDTMPDGSVSSPMKDDEKHLIQILLESFASN
RLGAPNCKAVLHGPFNPYELKCHSLTRISKFRCVWIEKESINSVVISDSPADLHQRMLVA
ASLSVNETGSTMLLRETSLMPHIPGLPALLSMLFAPVMELRVDREGKCYTGVLCGLGWNS
TTEAPILPEHDIELAFDVCFNVEDIVEINILRAAINKLACDGPHGPKYLGPERIAQLQEN
ARQKLLGLFCRLKPREKITPQWHEKPYEWNQVDPRLVIEQAEREGGPGKSTCLYQLHTPV
VLSP
NT seq 4155 nt   +upstreamnt  +downstreamnt
atgttgcgcaagctcacggtcgaccagataaatgactggttcaccataggcaagacggtg
accaatgtggagctgctgggcttgccgcctgccttccctgcggaggcgccccgggaggag
gtccagcgctcggaggaggtccccagcgaggcccctacggcccaggcccaggatccagtt
aaggccacagcactggccagaccagcttcagcctttggaaggtcgctcagccagaggagc
tcagaagtagagtatattaacaaatacagacagcttgaagcacaagaacttgatatttat
ggccaagatcagccacccagtgggccaggtctgaggtcaccattggctaagataagtaat
gtggcatgcatcccagagacaacttacaaatatcctgatttgcctataaatcggtgtaaa
gaagaggttatttccttgatagaaagcaattctgtggtgatcatacacggtgccacaggg
agcggcaagagcacacagcttccacagtacgtcctggaccactacacacagcgctctgcc
ttctgcaacatcgtagtcacccagccacggaaaataggggccagcagcattgccaggtgg
atcagtaaggagcgctcctggactctgggtggcttggtaggctatcaggtagggctggag
aaaacagcaacagaagacactcggctgatttacatgaccactggagtcctgcttcagaag
atcgttagtgccaagagcttgatggagttcacgcacgtcttcattgatgaggtgcacgaa
cgaactgaagagatggatttcctgctcttggtagtccgtaaactcctgaggacaaactca
cgttttgtgaaggtgatcctcatgtctgccaccatcaactgcaagcagtttgcagactac
tttgctgttcctgttcagaacaagatgaaccctgcatatgtgtttgaggtggaaggcaag
ccccacactatcgaacagtattaccttaatgatttggggcacatttatcacagtgggctc
cccccctaccgtctggaggagccagtgataacgaaggacgtctatgaagttgccgtctcc
ctcatccagatgttcgatgacctggacatgaaggagagtgggaacaagacctggtccggg
gcccagtttgtgtcggagcggagcagcgtgctggtgtttctgccaggtctgggtgagatc
aattatatgcatgagcttctcacaaacatgattcacaaaaggttacaggtctatccactc
cattccagtgtgactttagaagaacagaataatgtatttttaagtccagtccctgggtac
agaaagattatcctgtcaaccaacattgcagagagttctgtcacagttcctgatgtcaaa
tatgttatagatttttgcctgacccgaactctggtttgtgatgaagatacaaattatcag
agtctgcggctaagctgggcctcgaagaccagctgtgaccagagaaaaggccgtgctgga
cgagtgtctaaaggatattgctacaggctgatccacagggacttctgggacagcgccatc
cctgaccacgttgttcctgagatgttgcgctgtccgctgggaagcaccgtattgaaggtg
aagttgctcgacatgggtgaacctagagctctgctggcaaccgcgctgtctccacccagc
ctgagtgacatcgagcgcaccattcttctgttgaaggaggttggagcactggcagttagt
gggcagagagaggacgaaaaccctcatgatggtgaattgaccttcctgggaagagtgctg
gcacagctccctgtcagtcagcagctgggtaaactcattgtgctgggacatgtatttggg
tgcctggatgagtgtctcatcatagcggcagctctttctctgaagaactttttcacgatg
ccttttcgacagcatctggatggatataggaacaaagtgcacttctcaggaagtagcagg
agtgactgcctggcacttgtggaggcgttcagggcctggcaggcttgcagacagcgagga
gagctgcggcatcccaaggatgaacttgactggggacggctgaattacattcaaataaag
agaatcagagaggtggctgagttatatgaagaattgaagaatagaatctcacagttcaac
atgtttgtggatcctcgccatcctgtcttggatcaggagtatccatataagcagcgcttc
atcctgcaggttgtactagctggtgctttttatccgaattactttacttttggacagcca
gacgaggagatggcagtaagggagctggcaggcagagacccaaagacaacagtcgtgctg
aagcacatccccccctatggatttctttactacaagcaactgcagtctctcttcagacag
tgcggtcaagtcaaatccattgtgtttgatggcgcaaaagcctttgtggagttttcacgg
aatccgacagaaagatttaagaccctccctgctgtgaacttggcagtcaagatgtcccag
ttaaaagtgtcccttgagctcagtatccatgccgcagaggagatcgaggggaaggtgcaa
ggcgggtcggtgtcaaagctcaggaacacaagggtgaatgtggacttccagaagcagaca
gtagaccccatgcaagtgtcattcaacaccctggacagaccccggacagtagcagatctc
ctcctgacagttgatgtcactgaggtggtagaagtggggcacttctgggggtacaggatc
gacgagaggaacgcagagctgctgagacaactgactgctgagataaaccgcctagagctg
gttcctctgcctatccacccgcatccggacttagtctgcctggcacctttcactgattac
aacaaggagagctactttagagctcaaattctttatgtttcgggaaattctgctgaggta
ttctttgtagactatgggaataggtctcatgtagacctagatctcctgagggagatcccc
tgtcagcttttggagcttccatttcaggctttggaattcaagatttgcaaaatgcgacca
tcagcaaagtctctcatctgtggagagcactggagtggaggcgccaatgggcggtttgcc
gccctggtcagcggctgccctctcctggtgaaggtgttctccattgtacacagcgtcctg
cacgtggacgtgtaccgatactcgggcgcccaggatgccgtcaacatcagagacgttctc
atcagggagggctatgctgagcttgcagaggagtcctatgagtccaaacaaagctatgaa
gtcctcaagggtttctttgctaagtcagtggacaccatgccggatggctctgtgtcctct
cctatgaaggacgacgagaagcatctcatccagattctgttggagagctttgcttccaat
cggctgggtgctccaaactgcaaggctgtcctccacgggccttttaatccttatgagctg
aagtgtcatagtctgaccagaatatccaagttcagatgtgtgtggattgagaaggagagc
atcaattctgtggtcatcagcgacagccctgccgacctgcaccagaggatgctggttgca
gcttcactctcagttaacgagactgggtccaccatgctcctgagagagacttccctgatg
cctcacatcccaggcctccccgcactcctcagcatgctgttcgcaccggtgatggagtta
agagttgaccgtgaaggaaagtgttacactggggtgctttgtggtttggggtggaattca
actacggaggcccctatactgccagagcatgacattgagctggcctttgatgtgtgcttc
aacgtggaggacatcgttgagattaatattctcagggctgctatcaacaagctagcgtgt
gatgggccacatggacccaagtatcttgggcctgagagaattgctcagttgcaggagaat
gcacgtcagaaacttctaggcttgttctgtcggttgaaaccacgagagaagattactcct
cagtggcatgagaaaccctacgagtggaaccaggtggacccaaggctggtcatcgagcag
gctgagcgggagggcggcccagggaagagcacttgcctgtaccagctgcacacgcctgtg
gtgctcagcccctga

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Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (11)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (9)   
DNA sequence (15)   
   RefSeq(nuc) (11)   
   GenBank (2)   
   EMBL (2)   
Protein domain (12)   
   Pfam (12)   
All databases (48)   

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