KEGG   Rattus norvegicus (rat): 299811
Entry
299811            CDS       T01003                                 
Symbol
Cpsf6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6
  KO
K14398  cleavage and polyadenylation specificity factor subunit 6/7
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03015  mRNA surveillance pathway
rno03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    299811 (Cpsf6)
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    299811 (Cpsf6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    299811 (Cpsf6)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor Im (CFIm)
     299811 (Cpsf6)
SSDB
Motif
Pfam: RRM_1 PRP38_assoc
Other DBs
NCBI-GeneID: 299811
NCBI-ProteinID: NP_001100255
RGD: 1304640
Ensembl: ENSRNOG00000005927
UniProt: A6IGS7 D3ZPL1
Position
7:complement(54798452..54887711)
AA seq 551 aa
MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTV
GDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN
GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQM
SGEGKAGPPGGGSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQTPPRPP
LGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPV
PGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPA
FFPPPTNSGMPTSDSRGPPPTDPYGRPPPYDRGDYGPPGREMDTARTPLSEAEFEEIMNR
NRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGI
ESKSYGSGSRRERSRERDHSRSREKSRRHKSRSRDRHDDYYRERSRERERHRDRDRDRDR
ERDREREYRHR
NT seq 1656 nt   +upstreamnt  +downstreamnt
atggcggacggtgtggaccacatagacatttacgcggatgtgggggaagagttcaaccag
gaagcggaatatggtgggcatgatcagatagatttgtatgatgatgtcatctctccatct
gcaaataatggcgatgccccagaagaccgggactacatggatactcttccaccaactgtt
ggtgatgatgtgggtaaaggggcagcaccaaacgttgtctatacttacactggaaagaga
atcgcattgtatattggaaatctaacatggtggacaacagatgaggacctaactgaagca
gttcattctttgggagtaaatgatattttggagataaaattttttgaaaatcgggcaaat
ggacaatcaaagggatttgcccttgttggtgttggatctgaagcatcttccaaaaagtta
atggatcttttgcctaaaagagaacttcacggtcagaatcctgttgtaactccatgcaat
aaacagttcctgagtcagtttgaaatgcaatccaggaaaactacacaatcaggacaaatg
tctggggaaggtaaagctggtcctccaggaggcggttcacgcgcagcatttccacaaggt
ggtagaggacggggccgttttccaggggctgttcctggtggggacagatttcctgggcca
gcaggaccaggagggccacctccacctttcccagctggacagactccaccacgtccacct
ctaggtccacctggcccacctggccccccaggtcctccacctcccggtcaggttctgcca
cctcctctagcaggacctcctaatcgaggagaccgccctccaccaccagttctttttcct
ggacaaccttttgggcagcctccgctgggtccacttcctcctgggcctccacctccagtt
ccaggctacggcccccctccaggtccaccgcctccacagcagggaccacctccacctcca
ggcccctttccacctcgaccaccaggtccactagggcctccccttacacttgctcctcct
ccacatcttccgggaccacctccaggtgccccaccaccagctccacatgtgaatcctgct
tttttccctccaccaactaatagtggcatgccaacatcagatagtcgaggtccaccgcca
acagacccatatggccgacctccaccatatgataggggtgactatggtccccctgggagg
gaaatggatactgcaagaacacctctgagtgaagctgagtttgaagaaatcatgaataga
aatcgggcaatctctagcagtgctatttcaagagctgtatctgatgctagtgctggtgat
tatgggagtgctattgaaacattggtaacagcaatttctctaattaaacaatccaaagta
tctgccgacgatcgctgcaaagttcttattagctctttgcaagactgccttcatggaatt
gagtccaagtcctatgggtctggatcaagacgtgaacgatcaagagaaagggaccatagt
agatcacgggaaaagagtcgacgtcataaatctcggagtagagatcgccatgatgattat
tacagagagagaagcagagagcgagagagacaccgggatcgcgatcgggatcgtgaccgg
gagcgcgaccgagagcgagaataccgtcatcgttag

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