KEGG   Rattus norvegicus (rat): 300052
Entry
300052            CDS       T01003                                 
Symbol
Vps28
Name
(RefSeq) vacuolar protein sorting-associated protein 28 homolog
  KO
K12184  ESCRT-I complex subunit VPS28
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    300052 (Vps28)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rno04131]
    300052 (Vps28)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rno04147]
    300052 (Vps28)
Membrane trafficking [BR:rno04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-I complex
    300052 (Vps28)
Exosome [BR:rno04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   300052 (Vps28)
  Exosomal proteins of other body fluids (saliva and urine)
   300052 (Vps28)
  Exosomal proteins of colorectal cancer cells
   300052 (Vps28)
  Exosomal proteins of bladder cancer cells
   300052 (Vps28)
SSDB
Motif
Pfam: VPS28
Other DBs
NCBI-GeneID: 300052
NCBI-ProteinID: NP_001123964
RGD: 1306537
Ensembl: ENSRNOG00000014633
UniProt: A0A0H2UHM0 A6HSB6
Position
7:complement(110222638..110226486)
AA seq 221 aa
MFHGIPATPGVGAPGNKPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDC
VTPNEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITIKD
DKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTV
SQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAFNRFLHS
NT seq 666 nt   +upstreamnt  +downstreamnt
atgtttcacgggatcccagctactcctggtgttggagcccctgggaacaagccggagcta
tacgaggaagtaaagttgtacaagaatgcccgggagcgggagaagtatgacaacatggcg
gagctctttgcggtggtgaaaacgatgcaagcgctggagaaggcatacatcaaggactgc
gtcacccccaatgagtacactgcagcctgctccaggctcctggtccagtacaaagctgcc
ttccggcaggtccaaggctcagagatcagctccattgatgaattttgccgaaagttcaga
ctggactgcccacttgctatggagcggatcaaagaggaccgacccatcaccatcaaggac
gacaagggcaatctcaaccgctgtattgcggacgtcgtctcgctcttcattacagtcatg
gacaagctgcgtctggagatccgcgccatggacgagatccagccagacctgcgggagcta
atggagaccatgcacagaatgagccacctgcctccagactttgagggccgccaaacagtc
agccagtggctgcagaccctgagtggtatgtcggcctctgatgagctagatgactcccaa
gttcgccagatgctcttcgatctggagtcagcttacaatgccttcaaccgcttcctacac
tcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (1)   
   Pfam (1)   
All databases (20)   

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