KEGG   Rattus norvegicus (rat): 300111
Entry
300111            CDS       T01003                                 
Symbol
Samm50
Name
(RefSeq) sorting and assembly machinery component 50 homolog
  KO
K07277  outer membrane protein insertion porin family
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04137  Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    300111 (Samm50)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03029 Mitochondrial biogenesis [BR:rno03029]
    300111 (Samm50)
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:rno02000]
    300111 (Samm50)
Mitochondrial biogenesis [BR:rno03029]
 Mitochondrial protein import machinery
  Outer membrane
   TOB/SAM complex
    300111 (Samm50)
Transporters [BR:rno02000]
 Other transporters
  Pores ion channels [TC:1]
   300111 (Samm50)
SSDB
Motif
Pfam: Omp85 POTRA Thiol_cytolysin
Other DBs
NCBI-GeneID: 300111
NCBI-ProteinID: NP_001004241
RGD: 1303219
Ensembl: ENSRNOG00000011952
UniProt: Q6AXV4 A6HTB5
Position
7:117197460..117221668
AA seq 469 aa
MGTVHARSLEPLPSSGTDFGALGEEAEFVEVEPEAKQEILENKDVVVQHVHFDGLERTKD
DIIICEIGEVFKAKNLIEVMRRSHEAREKLLRLGIFRQVDVLIDTCHGEDALPNGLDVTF
EVTELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQ
PGNFEKNFSVNLYKVTGQFPWSSLRETDRGVSAEYSFPLCKTSHTVKWEGVWRELGCLAR
TASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDF
ELQLNKPLVLDSVFSTSLWGGMLVPIGDKLSSIADRFYLGGPTSVRGFSMHSIGPQSEGD
YLGGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFLNAGNLCNLNYGEGPRAHIRKLAE
CIRWSYGAGIVLRLGNIARLELNYCIPMGVQRGDRICDGVQFGAGIRFL
NT seq 1410 nt   +upstreamnt  +downstreamnt
atggggacagtgcacgccaggagtctggagcctctcccatcaagtggaactgactttgga
gcactgggggaggaagcggagtttgtggaagttgaacctgaagcaaaacaggaaatcctg
gaaaacaaagatgtggtggttcagcatgttcattttgatggacttgaacggaccaaggat
gacatcatcatatgtgaaatcggagaggtttttaaggctaaaaacctcattgaggtaatg
cggcggtctcatgaggcccgtgaaaaactgcttcgcctaggaatttttagacaagtggat
gttttgatagacacgtgtcatggcgaagatgccctgccaaatgggctagatgtcaccttt
gaagttacagagctaaggagactgacgggcagttacaacaccatggttggaaacaacgaa
ggcagtatggtactcggcctcaaactccccaatcttctgggacgtgcagaaaaagtgact
ttccagttttcttatggaaccaaagaaacttcctacggcctgtctttcttcaagccacag
cctgggaacttcgagaaaaacttctcggtaaacttatataaagttaccgggcagttccca
tggagctcacttcgggagacggacagaggagtgtctgctgagtacagttttccactatgc
aagaccagtcacactgtcaagtgggagggtgtgtggcgggaactgggctgcctcgcgcgg
actgcgtcattcgctgtgcggaaggaaagtggacactcattgaagtcgtctctctcgcat
gccatggtcattgactctcggaattcatctatcttgccaagaagaggggccttgctcaaa
gtcaaccaggagctggcaggctacactggaggagatgtgagcttcatcaaggaagacttt
gagcttcagctgaataagccgcttgtattggattcggtgttctccacgtccctctggggt
ggaatgctggtgcccatcggtgacaagctatccagcattgctgacaggttttacctggga
ggccccacgagcgtccgaggatttagcatgcacagcatcggaccccagagcgaaggagat
tacctgggcggggaggcatactgggccgggggcctgcacctctataccccactgcctttc
cggccaggccagggtggcttcggagagcttttcagaactcactttttcctcaatgctggc
aacctgtgcaacctcaactacggtgagggccccagagcccacatccggaagctggctgaa
tgcatccgctggtcctatggtgcaggcatcgtcctccggcttggcaacattgctcggctg
gagctgaactactgcattcctatgggtgtgcagcgaggcgacaggatttgtgatggcgtc
cagtttggagctgggattcggttcctgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (21)   

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