KEGG   Rattus norvegicus (rat): 300121
Entry
300121            CDS       T01003                                 
Symbol
Smc1b
Name
(RefSeq) structural maintenance of chromosomes protein 1B
  KO
K06636  structural maintenance of chromosome 1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04110  Cell cycle
rno04114  Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    300121 (Smc1b)
   04114 Oocyte meiosis
    300121 (Smc1b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    300121 (Smc1b)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   Cohesin complex
    300121 (Smc1b)
  Meiosis-specific proteins
   Cohesin complex and associated proteins
    300121 (Smc1b)
SSDB
Motif
Pfam: SMC_N SMC_hinge AAA_21 AAA_23 AAA_29 AAA_15 ABC_tran Ca_chan_IQ
Other DBs
NCBI-GeneID: 300121
NCBI-ProteinID: NP_001123970
RGD: 1308791
Ensembl: ENSRNOG00000032570
UniProt: A6HTD3 D3ZE73
Position
7:complement(118060898..118122683)
AA seq 1247 aa
MGHLELLLVENFKSWRGRQVIGPFKRFTCIIGPNGSGKSNVMDALSFVMGEKTTNLRVKN
IQELIHGAHIGKPVSSSASVTIIYVEDSGEEKTFTRIIRGGCSEFHFGDKPVSRSVYVAQ
LENIGIIVKAQNCLVFQGTVESISMKKPKERTQFFEEISTSGEFIGEYEAKKKKLQKAEE
DAQFHFNRKKNVAAERKHAKIEKEEAEHYQSLLEELKTNKIQLMLFQLYYNEEKINVLNT
ELEHMDRNLSVVKDTLSHHENIIKAKKKDYGMLTRQLQQTAKELKSVEAVLNQKRPQYIK
AKENTSHHLKKLDLSKKLITDNEKQCAKQEDGIRALVAELVDLDRAWRSFEKQMEEKILH
KGRDIELENSQLDRYKELKEQVRRRVGIMTQQLEKLQWEQKAEKERLAFERRRHGDTQGN
LKQIKEQIEEHKKRIEKLEEYTKTCMDCLEDKKQQEEALIKEIDNTKSRMSEVNEELSLI
RNELQNAGIDNHEGKRQRKRAEVLEHLKRLYPDSVFGRLLDLCHPIHKKYQLAVTKLFGR
YMVAIVVASEKVAKDCIRFLKEERAEPETFLALDYLDIKPINERLREIKGCKMMIDVIKT
QFPQLKKVIQFVCGNGLVCETVEEARHIAFGGPERRKAVALDGTLFLKSGVISGGSSDLK
HKALCWDEKELHSLRDKRNQLVQELKELMKTLRKETDLKQIQALVQGTNTRLKYSQNELE
MIKKKHLATFYREQSQLQSELLNIDSQCTMLSEGINKQQQKIEEFQDKIDKVEDDIFQDF
CEEIGVENIREFENKHVKQQQENDQKRLEFEKQKTRLNIQLEYSRNQLKKKLNKIDTLKT
TIQKGREDIDNLKKTEEECLKIVEELMVKQEQVKEVLATQSSNIEKIHIQIEEERKKFLA
VDREVGKLQKEVVIIQGSLEQKQLEKHNLLLDCKVQDIDISLMLGSLEDIIEVELTETES
TQATADIYEKEASIQIDYSPLREDWKALQSDKEVEAHLTLLLQQVASQENTLLKTAAPNL
RAQENLKAVRDKFQESADAFEASRKEARICRQEFEQVKRRRYDAFSQCFEHISVSIDQIY
KKLCRNNSAQAFLSPENPEEPYLDGISYNCVAPGKRFMPMDNLSGGEKCVAALALLFAVH
SFRPAPFFVLDEVDAALDNTNIGKVSGYIKEQSQEQFQMIIISLKEEFYSRADALIGVYP
EHDECMFSHVLTLDLSKYPDTEDQEGSRSHRKPRARVSQSPQSPQSR
NT seq 3744 nt   +upstreamnt  +downstreamnt
atggggcaccttgagttgctgctcgtggagaatttcaagtcgtggcgaggccgccaggtc
atcggccctttcaagaggttcacctgtatcatcggccccaacggctcgggaaagtctaat
gtaatggatgcacttagttttgtaatgggagaaaaaacaactaatttaagagtaaaaaac
attcaagaacttattcatggagcacacattggaaaacctgtttcttcttctgcaagtgtg
accattatatacgtagaagacagtggagaagagaaaacattcacaaggattatccgaggg
gggtgctcagaatttcattttggggataaacctgtgagtcgttctgtgtatgtagcccag
ttggaaaacataggcataatagtcaaagcacagaactgtctagtttttcagggaactgta
gagtcaatatccatgaaaaaacccaaagagagaacccaattttttgaagaaatcagtact
tcaggagagtttataggagaatatgaggcaaagaaaaagaagttacaaaaagccgaagaa
gatgcacaatttcattttaacaggaaaaaaaatgtagctgcagaacggaagcatgcaaaa
atagagaaagaagaggcagaacattatcaaagtctccttgaagaattgaaaacaaacaag
atacaactgatgcttttccaactatattataatgaggaaaaaatcaatgttttaaacact
gaattagagcatatggacaggaatttaagtgttgtaaaagacactctttctcaccatgaa
aacataattaaagctaagaaaaaggattatggaatgttaactagacaactacagcaaaca
gcaaaagaactgaaatctgtcgaagcagttttaaatcagaagaggcctcagtacattaaa
gctaaagaaaacacttctcaccatctaaaaaaattggatttgtctaagaaattgataaca
gacaatgaaaaacaatgtgctaagcaggaagatggcattcgagccttagtggcagaactg
gttgatttagatagagcatggagaagttttgaaaagcagatggaagagaaaatcttacac
aaaggaagagacattgaattggaaaatagtcagctggaccgttataaagagcttaaggaa
caagtcagacggagggtaggtataatgacacaacaactggaaaaactacagtgggaacag
aaggcagaaaaagaaagactggcatttgaaaggaggaggcatggagacactcagggaaat
ctaaaacaaataaaagaacaaatagaagagcataaaaaacgaatagagaaattggaggaa
tatacaaagacgtgcatggattgcttggaagataaaaaacagcaagaagaagccctgata
aaagaaattgacaatacaaaatcaagaatgtctgaagttaatgaagaattgagtcttatt
agaaatgaattgcagaatgctggaattgataaccatgaaggaaaacgtcagcggaaaaga
gcagaagttctcgaacaccttaaaagactttacccagattctgtgtttggaagacttctt
gatctatgtcatcctattcataagaaataccagctggctgtgactaagctttttggccgg
tacatggttgccattgttgttgcctcagaaaaggtagcaaaagattgtattcggtttctg
aaggaggaaagagctgaacctgagacattccttgctctagattaccttgatatcaagcca
atcaatgaacgactaagggaaattaaaggctgtaagatgatgatcgatgttataaagacc
cagtttcctcagctgaagaaagtgattcagtttgtttgtggaaatggccttgtctgtgag
actgtggaagaggcaagacatattgcatttggtggacctgaaagacgaaaggcagtagca
cttgatggaacactgtttttgaaatctggagtgatctcaggagggtcaagtgacttaaag
cacaaagctctgtgttgggatgagaaggagttacacagtctaagagataaaagaaaccaa
cttgtccaagagctaaaggagttaatgaagacgctccgcaaggaaacagatctgaaacaa
atacaggcattagtacaaggaaccaatacacgactcaaatattcacaaaatgaactagag
atgattaaaaagaagcaccttgctacattttaccgggaacaatctcagctacaaagtgaa
ttactgaatattgattctcagtgtacaatgttgagcgaaggaatcaacaaacagcaacaa
aagattgaagaatttcaagataagatagacaaggtagaagatgacatattccaagacttc
tgtgaagaaattggtgtggaaaatatccgtgaatttgagaacaaacatgttaaacagcag
caagaaaatgatcaaaaaagattagagtttgaaaaacaaaaaactcggctcaatattcag
cttgaatatagtcgaaatcaacttaagaagaaactgaataagatcgacacattaaaaaca
acaatccagaagggcagagaagacattgataacctaaagaagaccgaagaagagtgtctg
aaaattgttgaagaactcatggtgaaacaagaacaagttaaggaagtgcttgccacacag
agttccaacattgagaaaattcatattcaaattgaagaggaacgcaagaagtttttggct
gttgatagggaagttggaaaattacagaaggaagttgtaatcattcagggttctttggaa
cagaaacaactagagaagcataacttgctcctggactgcaaagttcaagacattgacata
agtctcatgctggggtcattggaggacatcattgaagtggagctaactgaaacagaaagt
acccaggcaacggctgatatctatgaaaaagaagcatccatccaaatagactacagccct
ctaagggaggattggaaggctctacaatcagataaggaggtggaggcccacctcacactc
cttctacagcaagtagcatcccaagaaaatactctactgaagactgcagctccaaacctg
cgagcacaggagaacttaaaggctgtcagagacaaatttcaagaatctgcagatgctttt
gaggccagcagaaaggaagccagaatatgtaggcaagagtttgaacaggtgaaaagacgg
aggtacgatgctttcagtcagtgttttgagcacatctcggtctcaattgatcaaatctac
aagaagctctgcaggaacaacagtgcccaggcatttcttagcccagagaaccctgaagaa
ccttacttagatggaattagctataattgtgtggctccaggcaaacggttcatgcctatg
gacaacttgtcagggggagaaaagtgtgtggctgctctggctcttctgtttgctgtacac
agttttcgacctgctccattctttgtattagatgaagtagatgcagccctggacaatact
aacatcggcaaagtctcaggttacatcaaagagcagagtcaggaacaatttcagatgata
atcatttccctgaaagaggagttttactccagagctgatgcactgataggcgtctaccca
gagcacgatgaatgcatgttcagccatgtgttgactctggacctttccaagtatccagac
actgaagaccaagaaggcagcaggagccaccggaaacccagagcacgagtatcacagtcc
ccgcagtctccccagtctcgttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (8)   
   Pfam (8)   
All databases (25)   

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