KEGG   Rattus norvegicus (rat): 300218
Entry
300218            CDS       T01003                                 
Symbol
Tuba1c
Name
(RefSeq) tubulin alpha-1C chain
  KO
K07374  tubulin alpha
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04145  Phagosome
rno04210  Apoptosis
rno04530  Tight junction
rno04540  Gap junction
rno04814  Motor proteins
rno05010  Alzheimer disease
rno05012  Parkinson disease
rno05014  Amyotrophic lateral sclerosis
rno05016  Huntington disease
rno05020  Prion disease
rno05022  Pathways of neurodegeneration - multiple diseases
rno05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    300218 (Tuba1c)
  09143 Cell growth and death
   04210 Apoptosis
    300218 (Tuba1c)
  09144 Cellular community - eukaryotes
   04530 Tight junction
    300218 (Tuba1c)
   04540 Gap junction
    300218 (Tuba1c)
  09142 Cell motility
   04814 Motor proteins
    300218 (Tuba1c)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    300218 (Tuba1c)
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    300218 (Tuba1c)
   05012 Parkinson disease
    300218 (Tuba1c)
   05014 Amyotrophic lateral sclerosis
    300218 (Tuba1c)
   05016 Huntington disease
    300218 (Tuba1c)
   05020 Prion disease
    300218 (Tuba1c)
   05022 Pathways of neurodegeneration - multiple diseases
    300218 (Tuba1c)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    300218 (Tuba1c)
   03036 Chromosome and associated proteins [BR:rno03036]
    300218 (Tuba1c)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:rno04812]
    300218 (Tuba1c)
   04147 Exosome [BR:rno04147]
    300218 (Tuba1c)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     300218 (Tuba1c)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Centrosome formation proteins
   Microtubules and associated factors
    Other tubulins
     300218 (Tuba1c)
Cytoskeleton proteins [BR:rno04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulins
    300218 (Tuba1c)
Exosome [BR:rno04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   300218 (Tuba1c)
  Exosomal proteins of other body fluids (saliva and urine)
   300218 (Tuba1c)
  Exosomal proteins of colorectal cancer cells
   300218 (Tuba1c)
SSDB
Motif
Pfam: Tubulin Tubulin_C Tubulin_3
Other DBs
NCBI-GeneID: 300218
NCBI-ProteinID: NP_001011995
RGD: 1307226
Ensembl: ENSRNOG00000021438
UniProt: Q6AYZ1 A6KCD2
Position
7:131636974..132078589
AA seq 449 aa
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN
QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
TVVPGGDLARVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
AREDMAALEKDYEEVGADSAEGDDEGEEY
NT seq 1350 nt   +upstreamnt  +downstreamnt
atgcgtgagtgcatctccatccacgttggccaggctggtgtccagatcggcaatgcctgc
tgggagctctactgcctggaacatggcatccagcctgatggccagatgccaagtgacaag
accattgggggaggagatgactccttcaacaccttcttcagtgagacaggagctggcaag
cacgtgccccgggcggtgttcgtagacctggaacccacagttattgatgaagttcgaact
ggcacctaccgccagctcttccacccagagcagctcatcacaggcaaggaagatgctgcc
aataactatgcccgtggccactacaccattggcaaggagatcattgaccttgtcttggac
agaattcgcaagctggctgaccagtgcacgggtctccagggcttcttggttttccacagc
tttggtgggggaactggctctgggttcacctccctgctgatggagaggctctctgtcgac
tacggaaagaagtccaagctggagttctccatttacccagccccccaggtttccactgct
gtggttgagccctacaattccatcctcaccacccacaccaccctggagcactctgattgt
gccttcatggtagacaatgaggccatctatgacatctgtcgtagaaacctcgacattgag
cgcccaacctacactaaccttaaccgccttattagccagattgtgtcttccatcactgct
tccctcagatttgatggggccctgaatgttgatctgacagaattccagaccaacctggtg
ccctaccctcgaatccacttccctctggccacttatgcccctgtcatctctgctgagaaa
gcctaccatgagcaacttacagtagcagagatcaccaatgcctgctttgagccagccaac
cagatggtgaaatgtgaccctcgccatggtaaatacatggcttgctgcctgctgtaccgt
ggtgatgtggtccccaaggatgtcaatgctgccattgccaccatcaagaccaagcgtacc
atccagtttgtggactggtgccccactggcttcaaggttggcattaattaccagcctccc
actgtggtacctggtggcgacctggccagggtgcagagagctgtgtgtatgctgagcaac
accacagccattgctgaggcctgggctcgcctggatcacaagtttgatctgatgtatgcc
aagcgtgcctttgtgcactggtatgtgggtgagggcatggaggagggggagttctctgag
gcccgtgaggatatggctgccctagagaaggattatgaggaggttggggcagatagtgct
gaaggagacgatgagggtgaagaatattaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (12)   
   KEGG PATHWAY (12)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (9)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (6)   
DNA sequence (32)   
   RefSeq(nuc) (6)   
   GenBank (13)   
   EMBL (13)   
Protein domain (3)   
   Pfam (3)   
All databases (68)   

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