KEGG   Rattus norvegicus (rat): 300250
Entry
300250            CDS       T01003                                 
Symbol
Krt1
Name
(RefSeq) keratin, type II cytoskeletal 1
  KO
K07605  type II keratin, basic
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:rno04812]
    300250 (Krt1)
   04147 Exosome [BR:rno04147]
    300250 (Krt1)
Cytoskeleton proteins [BR:rno04812]
 Eukaryotic cytoskeleton proteins
  Intermediate filaments
   Intermediate filaments
    Types I and II: Acidic and basic keratins
     300250 (Krt1)
Exosome [BR:rno04147]
 Exosomal proteins
  Exosomal proteins of epithelial cells
   300250 (Krt1)
  Exosomal proteins of other body fluids (saliva and urine)
   300250 (Krt1)
  Exosomal proteins of colorectal cancer cells
   300250 (Krt1)
  Exosomal proteins of bladder cancer cells
   300250 (Krt1)
SSDB
Motif
Pfam: Filament Keratin_2_head Keratin_2_tail TPR_MLP1_2 Alanine_zipper FapA ATG16 CENP-F_leu_zip She9_MDM33 Tropomyosin XhlA SlyX DUF745 COG6_N ANAPC4 SAT DASH_Duo1 DUF1664 Fib_alpha HpHbR FPP CCDC22_CC CEP63 Baculo_PEP_C
Other DBs
NCBI-GeneID: 300250
NCBI-ProteinID: NP_001008802
RGD: 1359664
Ensembl: ENSRNOG00000028996
Vega: OTTRNOG00000001616
UniProt: Q6IMF3 A0A0G2JST3
Position
7:complement(134855311..134860537)
AA seq 625 aa
MSFQCSSRSLCRSGGGGGGRNFSSGSAGLVSFQRRSTSSSMRRSGGGGGGRFSGGGFCGS
SGGGFGSKSLVNLGGGRSISISVAGGGSSYGGGFGGGSYGGGSFGGGSFGGGVGGGFGGG
GFGGGGFGSGGGFGGGRFGGGFGPVCPPGGIQEVTINQSLLQPLNVEVDPQIQKVKSQER
EQIKSLNDKFASFIDKVRFLEQQNQVLQTKWELLQQVDTSTRTQNLDPFFESYISNLRRQ
VDSLKNDQSRMDSELKNMQDLVEEYRTKYEDEINKRTNAENEFVTIKKDVDSAYMNKAEL
QARVDNLQQDIDFFSTLYQMELSQMQTQISETNVVLSMDNNRTLDLDGIIAEVKAQYDSI
CQRSKAEAETFYQSKYEELQITAGKHGDSVKNTKMEISELNRVIQRLRSEIDSVKKQISQ
MQQNISDAEQRGEKALKDAQNKLNEIEDALTQAKEELTRLLRDYQELMNTKLALDMEIAT
YRKLLEGEEIRMSGECTPNVSVSVSTSHTSMSGSSSRGGGRYGSGGGGGGGSYGGGSRGG
SYGGGSGGGSYGGGSSGGGSGGGSYGGGSSGGHRGGSGGGGGSSGGSYGGSSGGGRGGSS
SGGGVKSSGSSSVKFVSTTYSRGTN
NT seq 1878 nt   +upstreamnt  +downstreamnt
atgagttttcagtgtagttccaggtccctgtgccggagcggtggtggcggcggcggcagg
aactttagctcaggttctgcaggcctagtcagcttccaacgcagatccaccagcagctcc
atgcgccgcagcggcggaggaggaggtggtagattttcgggaggaggcttctgtgggagc
tctggtggtggctttggaagtaaaagtctggtcaacctcggaggtggcaggagcatctcc
ataagtgtggctggaggtggtagcagctacggtggtggctttgggggcggcagctacggt
ggcggtagctttgggggtggcagttttggtggaggtgtcggcggtggttttggtggtggt
ggttttggtggtggcggctttggtagtggaggtggttttggtggtggtagatttgggggt
ggtttcgggcctgtctgtccccctggtggcatccaggaagtgaccatcaaccagagcctt
ctgcaacccctcaatgtcgaggtggaccctcagatccaaaaagtgaagtctcaggagaga
gaacagatcaagtcgctcaatgacaaatttgcctccttcatcgacaaggtgcgcttccta
gagcaacaaaaccaggtgctacagaccaaatgggagctgctgcagcaggtagacacctca
acccggacccaaaacttagatcctttcttcgagtcatacatcagcaacctcaggaggcaa
gtggactcactgaagaacgaccaatcacggatggattccgaactgaagaacatgcaagac
ctggtggaagagtacaggaccaagtacgaggatgaaatcaacaagagaaccaacgcagag
aatgaattcgtgaccatcaagaaggatgtggattcggcttatatgaacaaagcagagctt
caggccagggtggataacctccaacaagatatcgacttcttctccacactctaccaaatg
gaattgtctcagatgcaaactcaaatcagcgaaaccaacgttgtcctgtccatggacaac
aaccgcactttggacctggacggcatcattgcagaagtcaaggcccagtatgatagcatt
tgccagaggagcaaggccgaagccgagaccttttaccagagcaagtatgaagagctgcag
atcactgctggtaaacacggagacagcgtgaaaaataccaagatggagatttccgagctg
aacagagtgatccagagacttcgatctgaaatcgatagcgtcaagaagcagatctcccaa
atgcagcagaatatcagtgatgcagagcagcgtggtgagaaagcactcaaagatgctcag
aacaagctgaatgagatagaggacgctttgacacaagccaaggaggagctcaccaggttg
ctgcgtgactaccaggagctgatgaacaccaagctggccctggacatggagatcgccacc
tacaggaaacttctggaaggagaggagatcaggatgtctggagaatgcacccccaacgtg
agcgtgtctgtgagcaccagccacactagcatgagcggaagcagcagccgaggtggcggc
agatacggctccggaggcggcggcggtggcggcagctacggcggcggctccagaggcggc
agctacggaggtggttccggaggcggcagctacggaggtggcagctctggaggcggctcc
ggaggcggcagctacggcggcggcagcagtgggggccacagaggtggctctggagggggc
ggtggcagctccggaggcagctatggtggttcctctgggggaggccggggaggatccagc
tccggtggcggcgttaagtcctctggcagttctagtgtgaagtttgtttccaccacttac
tcccgagggaccaactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (24)   
   Pfam (24)   
All databases (46)   

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