KEGG   Rattus norvegicus (rat): 300807
Entry
300807            CDS       T01003                                 
Symbol
Rora
Name
(RefSeq) nuclear receptor ROR-alpha isoform X1
  KO
K08532  RAR-related orphan receptor alpha
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04659  Th17 cell differentiation
rno04710  Circadian rhythm
rno05017  Spinocerebellar ataxia
rno05321  Inflammatory bowel disease
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09151 Immune system
   04659 Th17 cell differentiation
    300807 (Rora)
  09159 Environmental adaptation
   04710 Circadian rhythm
    300807 (Rora)
 09160 Human Diseases
  09163 Immune disease
   05321 Inflammatory bowel disease
    300807 (Rora)
  09164 Neurodegenerative disease
   05017 Spinocerebellar ataxia
    300807 (Rora)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    300807 (Rora)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:rno03310]
    300807 (Rora)
Transcription factors [BR:rno03000]
 Eukaryotic type
  Zinc finger
   Cys4 thyroid hormone receptor-like
    300807 (Rora)
Nuclear receptors [BR:rno03310]
 1. Thyroid hormone like
  1F. RAR-related orphan receptor
   300807 (Rora)
SSDB
Motif
Pfam: zf-C4 Hormone_recep
Other DBs
NCBI-GeneID: 300807
NCBI-ProteinID: XP_038938752
RGD: 1308419
Ensembl: ENSRNOG00000027145
UniProt: F1LZZ3
Position
8:78182710..78915730
AA seq 522 aa
MESAPAAPDPAASEPGSSGSEAAAGSRETPLTQDAGRKSEAPGAGRRQSYASSSRGISVT
KKTHTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRT
SRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAE
PLTPTYNISANGLTELHDDLSTYMDGHTPEGSKADSAVSSFYLDIQPSPDQSGLDINGIK
PEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREELQQITW
QTFLQEEIENYQNKREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL
EVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIA
LFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALC
GRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSEFEPAMQIDG
NT seq 1569 nt   +upstreamnt  +downstreamnt
atggagtcagctccggcagcccccgaccccgccgccagcgagccgggcagcagcggctcg
gaggcggccgccggctccagggagaccccgttgacccaggacgcgggccgcaagagcgag
gcaccgggcgcggggcgcaggcagagctatgcgagctccagccgaggtatctcagtcacg
aagaagacacacacatctcaaattgaaattattccatgcaagatctgtggagacaaatcg
tcaggaatccattatggtgtcattacgtgtgaaggctgcaagggctttttcaggagaagt
cagcagagcaatgccacctactcctgtcctcggcagaagaactgtttgatcgataggacc
agcagaaaccgctgccagcactgccggctgcagaagtgcctggctgtggggatgtctcga
gatgctgtcaagtttggccggatgtccaagaagcaaagagacagcctgtacgccgaggtg
cagaagcaccggatgcagcagcagcagcgagaccaccagcagcaacctggggaggctgag
ccgctgacgcccacctacaacatctcagccaatgggctgacggaactgcatgatgacctc
agcacctacatggacggccacacccccgagggcagcaaggccgactcagctgtcagcagc
ttctacctggacatccagccctccccagaccagtcgggactggacatcaatgggatcaaa
cccgaacccatatgtgactacacaccagcatctggcttcttcccctactgttccttcacc
aacggagagacttccccaaccgtgtccatggcggaactagaacaccttgcacagaacata
tccaaatcgcacctggaaacctgccaatacttgcgggaagagctccagcagataacgtgg
cagaccttcctgcaggaggagattgagaactaccagaacaagagagaggtgatgtggcag
ttgtgtgctatcaagattacagaagctatccagtatgtggtggagttcgccaaacgcatc
gacgggtttatggagctgtgtcaaaatgatcaaattgtgcttctaaaagcaggctctcta
gaggtggtgtttattaggatgtgccgtgcctttgactctcagaacaacaccgtgtacttt
gatgggaagtatgctagccccgatgtcttcaaatccttaggttgtgaagacttcattagc
tttgtgtttgaatttgggaagagtttgtgttctatgcatctgactgaagacgaaatcgca
ttgttttctgcatttgtactgatgtcagcagatcgctcctggcttcaggaaaaggtaaaa
atagaaaaactgcaacagaaaattcagctagcccttcaacatgtccttcagaagaaccac
cgagaagatggaattctaacaaagctaatatgcaaggtgtctacgttaagagccctatgc
ggacgacatacagaaaagctaatggcatttaaagcaatatacccagacattgtgcgactc
cattttcctccgttatacaaggaattgttcacttcagaatttgagccagcaatgcaaatc
gatgggtaa

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