KEGG   Rattus norvegicus (rat): 301020
Entry
301020            CDS       T01003                                 
Symbol
Smarcc1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1
  KO
K11649  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03082  ATP-dependent chromatin remodeling
rno04714  Thermogenesis
rno05225  Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    301020 (Smarcc1)
 09150 Organismal Systems
  09159 Environmental adaptation
   04714 Thermogenesis
    301020 (Smarcc1)
 09160 Human Diseases
  09162 Cancer: specific types
   05225 Hepatocellular carcinoma
    301020 (Smarcc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    301020 (Smarcc1)
   03036 Chromosome and associated proteins [BR:rno03036]
    301020 (Smarcc1)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     301020 (Smarcc1)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    301020 (Smarcc1)
   PBAF complex
    301020 (Smarcc1)
   GBAF(ncBAF) complex
    301020 (Smarcc1)
SSDB
Motif
Pfam: SWIRM-assoc_2 SWIRM-assoc_3 SWIRM-assoc_1 SWIRM Myb_DNA-binding Myb_DNA-bind_6 DUF919 Chromo BRCT_2 SpeFL
Other DBs
NCBI-GeneID: 301020
NCBI-ProteinID: NP_001400502
RGD: 1304850
Ensembl: ENSRNOG00000020804
Position
8:118986917..119093161
AA seq 1102 aa
MATTAGGGPGAAAGAVGAGGAAAASGLAVYRRKDGGPASKFWESPDTVSQLDSVRVWLGK
HYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGTLCHI
LGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNNCLTRPNIYLIPDIDLKLA
NKLKDIIKRHQGTFTDEKSKASHHIYPYPSSQEDEEWLRPVMRRDKQVLVHWGFYPDSYD
TWVHSNDVDAEIEDAPIPEKPWKVHVKWILDTDVFNEWMNEEDYEVDENRKPVSFRQRIS
TKNEEPVRSPERRERKASANARKRKHSPSPPPPTATESRKKSGKKGQASLYGKRRNQKDE
DEQEDLTKDMEDPTPVPNIEEVLLPKNVNPKKDSENTPVKGGTVADLDEQDEEAVTTGGK
EDEDPSKGDPSRSADAGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGKNKS
KTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQVDP
ESRPMAMGPPPTPHFNVLADTPSGLVPLHLRSPQVPAAQQMLNFPEKNKEKPIDLQNFGL
RTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHF
LRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEE
FSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPEKLEGSEEEKM
ETDPDGQQPEKAENKGENESDEGDKIQDGENEKNSEKERDSDTSEDVKPEEKENEENKEL
TDTCKERESDTGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLVE
TQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQQ
QHGQPPQQAHQHPGGPGLAPLGAAGHPGMMPHQQPPPYPMMHHQMPPPHPPQPGQIPGPG
SMMPGQPMPGRMIPTVAANIHPTGSGPTPPGMPPMPGNILGPRVPLTAPNGMYPPPPQQP
PPPPADGVPPPPVPGPPASATP
NT seq 3309 nt   +upstreamnt  +downstreamnt
atggccacgacagcgggtggtggtccgggagcagcagcaggcgccgtgggtgcagggggt
gcggcggcggcctccgggttggccgtgtaccggaggaaggacgggggcccggccagcaag
ttttgggagagcccggacacggtgtcccagctagattcggtgcgagtctggctgggcaag
cactacaagaagtatgttcatgcggatgcgcctaccaataaaacactggctggactggtg
gtgcagcttctgcagttccaagaagatgcctttgggaagcatgtcaccaacccagctttc
accaaactacctgcaaaatgtttcatggatttcaaagctggaggcaccttgtgtcacatt
cttggggctgcttacaagtacaaaaatgaacagggctggcgcagatttgacctgcagaac
ccatcgcgaatggaccgtaatgttgagatgttcatgaacatcgagaaaacattggtacag
aacaactgtctgactagacctaacatctacctcattccagacattgatttgaagttggct
aacaagttgaaggatatcatcaaacggcatcaggggacgtttactgatgagaagtcaaaa
gcttcccaccatatttacccatacccttcctctcaagaggacgaggagtggctgaggcca
gtgatgaggagagacaagcaggtgctggtgcactggggcttctaccctgacagctatgac
acatgggtccatagtaatgatgttgatgctgaaattgaagatgcaccaatcccagaaaag
ccatggaaggttcatgtgaaatggattttggacactgatgttttcaatgaatggatgaat
gaagaggattatgaagtggatgagaacagaaagccagtgagttttcgtcaacgaatttca
acaaagaatgaagagccagtcagaagtccagaaaggagagagaggaaagcatccgccaat
gctcgcaagaggaagcattccccttctcctcctcctcctacagccacggagtctcggaag
aagagtgggaagaaaggacaagctagtctctatgggaagcgtcgaaatcagaaggacgag
gatgagcaggaagatcttaccaaggacatggaagacccaacccctgtccccaacatagag
gaagtgcttctcccgaagaacgtaaacccaaagaaggacagtgaaaacacaccagttaaa
ggaggcacggtggcagatctagatgagcaggatgaagaagccgttacaacaggaggaaag
gaagatgaagatcccagcaaaggtgatccaagtcgttcagctgacgcaggtgaagacaat
gtgacagaacagaccaatcacatcattattcccagctacgcttcctggtttgattataat
tgtattcatgtgattgaacggcgtgcgcttcccgagttttttaatggaaaaaacaaatcc
aagactcctgaaatatacttggcatatcgaaattttatgattgatacataccgtctaaat
cctcaagaatatttaaccagcactgcttgtcggcgaaacctgactggagatgtgtgtgct
gtgatgagggttcatgccttcttagagcagtggggtcttgttaactaccaagttgatcca
gaaagtcgacccatggcaatgggacctcctcccactcctcatttcaatgtgttagctgac
acaccctctgggctcgtgcctctgcatcttcgatcacctcaggtccctgctgctcaacag
atgttaaattttcctgagaagaacaaggagaaaccaattgatttgcagaactttggtctt
cgaactgacatttactccaagaaaacactggcaaagagtaaaggagctagtgccggaagg
gagtggacagaacaggagacccttcttctcctagaggctctggagatgtacaaggatgat
tggaataaagtctcggaacatgttggaagccgtactcaggatgaatgcatcctccacttt
ttgaggcttcccattgaggacccataccttgaaaattcagatgcttctcttgggccacta
gcttaccagcctgtccctttcagccagtcaggaaaccccgtgatgagtactgttgccttt
ttagcatccgtggttgaccctcgagtagcatcagctgcagccaaagcagctttggaggag
ttttctcgtgtccgagaagaagtacccctggaattggtggaagcgcatgtcaagaaagta
caggaagctgcaagagcctctgggaaggtggatcctacctacggcctggagagcagctgc
attgcaggcaccgggcccgatgagccggagaagcttgaagggtctgaagaagagaagatg
gaaacagatcctgatggtcagcagcctgaaaaggcagaaaacaaaggggaaaatgaatcg
gatgaaggggataaaatacaagatggagagaatgagaaaaacagcgagaaggaacgagat
agtgacaccagtgaggacgtcaagccagaagaaaaggagaatgaagagaacaaagagctc
actgatacatgtaaagaaagagaaagcgataccgggaagaagaaagtggagcacgagatt
tctgaaggaaatgttgccacagccgcagcagctgctctggcctcagctgctaccaaagcc
aagcacctggctgctgtcgaagaaagaaagatcaaatccctggtggctctcctggttgag
acacagatgaagaagctagagatcaaacttcgacattttgaagagctggagactattatg
gacagagagaaagaggctctagaacaacagagacagcagttgcttactgaacgtcagaac
ttccacatggagcaattgaaatatgctgaactgcgtgctcggcagcagatggagcagcag
cagcacggccagccacctcagcaagcacaccagcacccgggaggaccggggctggcccca
cttggggcagcaggccacccaggcatgatgcctcatcagcagccccctccataccccatg
atgcaccatcagatgccaccaccccatcctccccaaccaggtcaaataccaggccctggc
tccatgatgcctgggcaacctatgccaggtcgcatgattcccaccgtggcagccaacatt
caccctactgggagtggccctacccctcccggtatgcctccaatgcccggaaacatctta
ggaccccgggtacccctcacagcaccaaacggcatgtatcctcctccaccacagcagccg
ccgccgcctcctgcagatggggtccctccacctcctgttccaggccctccagcctcagcc
actccctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (2)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (10)   
   Pfam (10)   
All databases (31)   

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