KEGG   Rattus norvegicus (rat): 301038
Entry
301038            CDS       T01003                                 
Symbol
Ubp1
Name
(RefSeq) upstream-binding protein 1
  KO
K09275  transcription factor CP2 and related proteins
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    301038 (Ubp1)
Transcription factors [BR:rno03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   Grainyhead
    301038 (Ubp1)
SSDB
Motif
Pfam: CP2 SAM_3 SAM_1 SAM_PNT SAM_2
Other DBs
NCBI-GeneID: 301038
NCBI-ProteinID: NP_001178748
RGD: 1564700
Ensembl: ENSRNOG00000009729
Position
8:122748005..122793824
AA seq 540 aa
MAWVLSMDEVIESGLVHDFDSSLSGIGQELGAGAYSMSDVLALPIFKQEDSSLSLEAEAK
HPPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDVPEISGKLVKSIIRVV
FHDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPAKRT
SAFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKPKGA
DRKQKNDREKMEKRTAHEKEKYQPSYDTTILTEMRLEPIIEDAVEHEQKKSSKRTLPADY
GDSLAKRGSCSPWPDTPTAYVNNSPSPAPTFTSSQQSTCSVPDSNSSSPNHQGDGVAQAS
GEQIQPSATTQETQQWLLKNRFSSYTRLFSNFSGADLLKLTKEDLVQICGAADGIRLYNS
LKSRSVRPRLTIYVCQEQPSSAVPQGQPQAAGSGGEGGAGTPCVYHAIYLEEMVASEVAR
KLASVFNIPFHQINQVYRQGPTGIHILVSDQMVQNFQDESCFLFSTVKAENNDGIHIILK
NT seq 1623 nt   +upstreamnt  +downstreamnt
atggcctgggtgctcagtatggacgaggtgatcgagtccgggctggtgcacgacttcgac
tccagcctgtccggcatcggacaagagctgggcgctggcgcctacagcatgagtgatgtg
ttggcgctacccattttcaaacaagaagactccagcctttctttggaggctgaggccaag
caccccccattccagtacgtaatgtgtgctgcaacctcaccagccgtgaagctgcatgat
gagacgctcacttacttgaaccaaggccagtcttatgaaattcggatgctggataatcgc
aaaatgggagatgtgcctgagatcagtgggaagttggtgaagagcatcataagagtggtg
ttccatgacagacggctacagtacacggagcatcagcagcttgaaggctggaagtggaat
cgcccaggagaccggcttcttgatttagatattccaatgtctgtgggaataattgacaca
agaacaaatccaagccagttaaatgcagttgaatttctgtgggaccctgcaaagcgcaca
tctgccttcattcaggtacactgtatcagcaccgaattcaccccacgtaagcatggaggt
gaaaaaggagtgccttttaggatccaggttgacacctttaagcagaatgaaaacggggaa
tacacagatcatcttcactcagctagctgccaaatcaaagtctttaagcctaaaggtgcg
gacaggaaacaaaaaaatgaccgagaaaagatggagaagagaacagctcatgaaaaagaa
aagtatcagccgtcttacgacaccaccatcctcacagagatgaggcttgagcctataatt
gaagatgcagttgaacatgagcagaaaaagtccagcaagcggactttgccagcagactac
ggtgattctctggcaaagcgaggcagttgctctccatggcccgacacccctacagcctat
gtgaataacagcccttccccagcgcccactttcacctcctcacagcagagcacgtgcagt
gtcccagacagcaattcttcatccccaaatcaccagggagatggagttgcacaggcatcc
ggggagcaaattcagccttcagctacaacccaggaaacacagcagtggctgctcaaaaac
aggttctcttcctacacaagactgttctctaatttttcaggtgccgacttattaaagctg
acaaaggaggatttagttcagatttgtggtgcagccgatggaattaggctctataattcc
ctgaagtcaaggtcggttaggccccgcttaaccatctatgtctgccaggagcagccgagc
agtgctgtgccacaagggcagccacaagctgcaggcagtggaggtgaaggtggcgctggg
acgccctgcgtttatcatgcaatctacttggaagaaatggttgcttcagaagttgctcga
aaacttgcctcggtgtttaatattcctttccaccaaattaaccaggtttacagacagggc
cccactggtatccacattcttgttagtgaccagatggttcagaactttcaagatgagagt
tgttttttattctctacagtaaaagctgaaaataatgatggtattcacataattttgaag
tga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (11)   
   RefSeq(pep) (11)   
DNA sequence (22)   
   RefSeq(nuc) (12)   
   GenBank (5)   
   EMBL (5)   
Protein domain (5)   
   Pfam (5)   
All databases (47)   

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