KEGG   Rattus norvegicus (rat): 301042
Entry
301042            CDS       T01003                                 
Symbol
Trim71
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71
  KO
K12035  tripartite motif-containing protein 71 [EC:2.3.2.27]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno05206  MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:rno00001]
 09160 Human Diseases
  09161 Cancer: overview
   05206 MicroRNAs in cancer
    301042 (Trim71)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    301042 (Trim71)
   04121 Ubiquitin system [BR:rno04121]
    301042 (Trim71)
Enzymes [BR:rno01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     301042 (Trim71)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     301042 (Trim71)
Ubiquitin system [BR:rno04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    301042 (Trim71)
SSDB
Motif
Pfam: NHL Filamin DUF5128 zf-B_box SGL zf-C3HC4 zf-RING_5 zf-RING_UBOX COG5_N
Other DBs
NCBI-GeneID: 301042
NCBI-ProteinID: NP_001178730
RGD: 1566388
Ensembl: ENSRNOG00000030098
UniProt: D3ZVM4
Position
8:complement(123076499..123129016)
AA seq 855 aa
MASFPETDFQICLLCKEMCGSPAPLSSSSSASSSSSQTSTSSAGGGGPGAAARRLHVLPC
LHAFCRPCLEAHRLPAPGGAGPAEALKLRCPVCDQKVVLAEAAGMDALPSSAFLLSNLLD
AVVATADEPPPKNGRAGGGPGGAGGHSNHRHHAHHPAQRAAAPAPQPPPGPAASPGSLLL
RRPHGCSSCDEGNAASSRCLDCQEHLCDNCVRAHQRVRLTKDHYIERGPPGPAAASAAQQ
LGLGPPFAGAPFSILSVFPERLGFCQHHDDEVLHLYCDTCSVPICRECTLGRHGGHSFAY
LQDALQDSRALTIQLLADAQQGRQAIQLSIEQAQTVAEQVEMKAKVVQSEVKAVTARHKK
ALEERECELLWKVEKIRQVKAKSLYLQVEKLRQNLNKLESTISAVQQVLEEGRALDILLA
RDRMLAQVQELKTIRGLLQPQEDDRVMFTPPDQALYLALKSFGFVSSGAFAPLTKAAGDG
IKRALQGKVASFTVMGYDHNGEPRLSGGDLMSVVVLGPDGNLFGAEVSDQQNGTYVVSYR
PQLEGEHLVSVTLYNQHIENSPFKVVVKSGRSYVGIGLPVLSFGSEGDGEGKLCRPWGVS
VDKEGYIIVADRSNNRIQVFKPCGSFHHKFGTLGSRPGQFDRPAGVACDASRRIVVADKD
NHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRIQLFGPDGVF
LNKYGFEGSLWKHFDSPRGVAFNHEGHLVVTDFNNHRLLVIHPDCQSARFLGSEGTGNGQ
FLRPQGVAVDQEGRIIVADSRNHRVQMFEANGSFLCKFGAQGSGFGQMDRPSGIAVTPEG
LIVVVDFGNNRILIF
NT seq 2568 nt   +upstreamnt  +downstreamnt
atggcttcgttccctgagaccgacttccagatctgcctgctgtgcaaggagatgtgcggc
tcgcccgcgcctctctcctccagctcgtccgcctcttcatcgtcctcgcagacgtccacg
tcgtcggcgggcggcggcggccccggggcggcggcgcggcgcctgcacgtcctgccctgc
ctgcacgccttctgccggccgtgcctcgaggcgcaccggctcccggctcccggtggcgcc
ggccccgccgaggcgctgaagctgcgctgtcctgtgtgtgaccagaaggtggtcctggcc
gaggcggcaggcatggacgcgctgccgtcgtccgccttcctgctcagcaacctgctggac
gccgtggtggccaccgccgacgagccgccgcccaagaacgggcgcgcgggtggcggcccc
gggggcgcgggcggccacagcaatcaccggcaccacgcgcaccacccggcccagcgcgcc
gccgctccagcgccgcagccgccgcccggcccggccgcttctccagggtcgctgttgttg
cgccggccgcacggctgcagctcctgcgacgagggcaatgctgcctcgtcgcgctgcctc
gactgccaggaacacctgtgcgacaactgtgtccgcgcgcaccagcgcgtacgcctcacc
aaggaccactacatcgagcgcggcccgccggggcctgcggccgcctccgcggcgcagcag
ctggggctcgggccgcccttcgcaggcgcgcccttctccatcctctcggtgttcccggag
cgcctcggcttctgccaacaccacgacgacgaggtactacatctgtactgcgacacctgc
tccgtgcccatctgcagagagtgcacactgggccgccatggcggccacagcttcgcctac
ctccaggacgccctacaggactcacgggcactcaccatccagctgctggccgacgcccag
cagggccgccaggccattcagctgagcattgagcaggcgcagactgtggcagaacaagtg
gagatgaaggccaaggtggtccagtcggaggtcaaggccgtcacggcgagacacaagaaa
gctctggaggagcgtgagtgcgagctgctgtggaaggtggagaagatccggcaggtgaag
gctaagtctctctacctgcaggtggagaagctgcggcagaatctcaacaagctggagagc
accatcagcgccgtccagcaggtcctagaagagggccgagccctggacatcctgctggcc
cgagaccggatgctggctcaggtgcaggagctcaagaccatccggggcctcctgcagccc
caggaagatgaccgagttatgttcacaccccccgaccaggccctgtaccttgccctcaag
tcttttggctttgtcagcagtggggcctttgccccactcacgaaggccgcgggagatggc
atcaagcgagcccttcagggaaaggtggcctccttcactgtcatgggctatgaccacaat
ggtgagccccgcctctcaggaggtgacctgatgtcggtggtggtccttggccctgatgga
aacctgtttggtgcagaagtgagcgaccagcagaatgggacctacgtcgtgagctacagg
ccccagcttgagggtgaacacttggtatcagtgacgctgtataaccagcacatcgagaac
agccccttcaaggtagtggtcaagtcgggccgcagctatgtgggcatcgggctcccagtg
ttgagctttggcagcgagggtgatggcgagggtaagctctgcaggccctggggcgtgagt
gtggataaggagggctacatcatcgtggctgaccgcagcaataacagaattcaggtgttt
aagccctgtgggtctttccaccacaagtttggtaccctaggatctcggcccgggcagttt
gaccgaccggcgggggtggcctgcgacgcctcccgcaggatcgtggtggccgacaaagac
aatcatcgcatccagatcttcaccttcgagggccagttccttctgaagtttggcgagaaa
ggaaccaagaatgggcagtttaactacccgtgggatgtagcggtcaactctgagggcaag
atcctggtttcagacacccgaaaccaccgcatccagctgttcggacccgacggcgtcttc
ctgaataagtatggcttcgagggatctctctggaagcacttcgactccccacggggcgtg
gctttcaaccatgaaggtcacctggtagtcactgatttcaacaaccatcggctcctggtt
atccaccccgattgccagtctgcccgcttcctgggctctgagggcactggcaatgggcag
ttcctgcgaccacagggtgtggctgtagaccaggaagggcgaatcattgtcgccgattcc
agaaatcaccgtgtgcagatgtttgaggccaacggcagcttcctgtgcaagttcggtgct
caaggcagcggcttcgggcagatggaccgcccctcaggtatcgcggtcaccccggaagga
ttgatcgtcgtggtggactttggcaacaatcgaatcctcatcttctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (9)   
   Pfam (9)   
All databases (28)   

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