KEGG   Rattus norvegicus (rat): 301346
Entry
301346            CDS       T01003                                 
Symbol
Sema4c
Name
(RefSeq) semaphorin-4C precursor
  KO
K06521  semaphorin 4
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04360  Axon guidance
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09158 Development and regeneration
   04360 Axon guidance
    301346 (Sema4c)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:rno04090]
    301346 (Sema4c)
CD molecules [BR:rno04090]
 Proteins
  301346 (Sema4c)
SSDB
Motif
Pfam: Sema PSI Sema4F_C I-set Ig_3 Ig_2 ig
Other DBs
NCBI-GeneID: 301346
NCBI-ProteinID: NP_001100372
RGD: 1562837
Ensembl: ENSRNOG00000016254
Vega: OTTRNOG00000000836
UniProt: A6INE2 D4A9J3
Position
9:complement(46287540..46298041)
AA seq 834 aa
MAPHWAVWLLAAGLWGLGIGAEMWWNLAPRKTVSSGELVTVVRRFSQTGIQDFLTLTLTD
RSGLLYVGAREALFAFSVEALELQGVISWEAPAEKKIECTQKGKSNQTECFNFIRFLQPY
NASHLYVCGTYAFQPKCTYINMLTFTLDRAEFEDGKGKCPYDPAKGHTGLLVDGELYSAT
LNNFLGTEPVILRNMGPHHPIKTEYLAFWLNEPHFVGSAFVPESVGSFTGDDDKIYFFFS
ERAVEYDCYSEQVVARVARVCKGDMGGARTLQKKWTTFLKARLVCSAPDWKVYFNQLRAV
HTLLGASWHNTTFFAVFQARWGDMDLSAVCEYQLEHIQQVFEGPFKEYSEQAQKWARYTD
PVPTPRPGSCINNWHRDNGYTSSLELPDNTLNFIKKHPLMEEQVKPRLGRPLLVKKNTNF
THVVADRILGLDGATYTVLFIGTGDGWLLKAVSLGPWIHMVEELQVFDQEPVESLVLSQS
KKVLFAGSRSQLVQLSLADCTKYRFCVDCVLARDPYCAWNVNTSRCVATGGHSGSLLVQH
VANLDPSKMCIQYAIKKARPVVPKNITVVAGTDLVLPCHLSSNLAHALWTFRGRDLPAEQ
PGSFLYDTGLQALVVMAAQSRHSGPYHCYSEEQGTKLAAESYLVSVVAGSSVTLEARAPL
ENLGLVWLAVVALGAVCLVLLLLVLSLRRRLREELEKGSKAAERTLVYPLELPKEPASPP
FRPGPETDEKLWDPVGYYYSDGSLKIVPGHARCQPGGGPPSPPPGIPGQPLPSPTRLHLG
GGRNSNANGYVRLQLGGEDREGSGHPLPEIADELRRKLQQRQPLPDSNPEESSV
NT seq 2505 nt   +upstreamnt  +downstreamnt
atggccccacactgggctgtctggctgctggcagcagggctgtggggcctgggcattggg
gctgagatgtggtggaaccttgcgcctcggaagactgtatcttctggggagctggtcaca
gtagtgaggcggttctcccagacaggcatccaggacttcctgaccctgaccctgacagac
cgttctggcctattatatgtgggggcccgggaggcgctgtttgccttcagcgtagaggct
ctggagcttcaaggagtgatctcctgggaggctccagctgagaagaaaattgagtgtacc
cagaaagggaagagcaaccagaccgagtgcttcaacttcatccgcttccttcagccatac
aacgcctcccatctgtacgtttgtggtacctatgccttccagcccaagtgcacctacatc
aacatgctcacgttcaccttggatcgtgcagaatttgaggacgggaagggtaaatgccct
tacgacccagctaagggccacactggactccttgtggatggtgaactgtactcggctaca
ctcaataacttcctgggcacagagccggttatccttcgaaacatggggccccaccacccc
atcaagacggagtacctggctttttggttgaatgaacctcactttgtaggctctgccttt
gtccctgagagtgtgggaagcttcacgggagatgatgacaagatctacttcttcttcagt
gagcgggcagtggagtatgactgctactccgagcaggtggtggctcgagtggcacgagtc
tgtaagggtgacatggggggagcacggaccctgcagaagaagtggacaacgttcctgaaa
gctcggttggtgtgctcagccccggattggaaggtctacttcaaccagctgcgggcagtg
cacaccctgctgggcgcctcctggcacaacaccaccttcttcgcggtttttcaagctcga
tggggtgatatggacctgtcagcagtctgcgagtaccagttggaacatatccagcaggtg
tttgagggtcccttcaaggagtacagcgagcaagcccagaagtgggcccgctatactgac
ccagtacccaccccccggcccggttcgtgcatcaacaactggcaccgagacaatggctac
accagttctctggagctgcccgacaacacccttaacttcatcaagaagcacccgctgatg
gaggaacaggtgaagcctcggttgggccgccccctacttgtaaagaagaacacgaacttc
acacatgtggtggccgacaggatcctaggacttgatggcgccacctatacagtgttgttc
attggtacaggagatggttggctgctgaaagctgtaagcctggggccctggatccacatg
gtggaggagctgcaggtgtttgaccaggagccagtggaaagtctggtgctgtctcagagc
aagaaggtgctgtttgctggctcccgttctcaactggttcagctgtcgctggcggactgc
acgaagtatcgcttctgtgtagactgtgtccttgccagggacccctactgtgcctggaat
gtcaacaccagccgctgtgtggccaccggtggtcattcagggtcccttctggtccaacac
gtggcaaatttggacccttcaaagatgtgtatccagtatgccattaaaaaagccagacct
gttgttcccaaaaatatcacagttgtagcaggcacagacctggtcctaccctgccacctc
tcctccaatttggctcatgccctctggaccttcagaggccgggacctgcctgcagaacaa
cctggctccttcctttatgacacgggactccaggcgctggtggtgatggccgcccagtcc
cgccactctgggccctatcattgctattcagaggagcaggggacaaaactggctgcagaa
agctaccttgtttctgtcgtggctggctcatcggtgaccctggaggcacgggctcccttg
gaaaacctggggcttgtgtggctagccgtggtggccctgggggctgtgtgcctggtgttg
ctgctgttggttctctcgctccgccggcgcctgcgagaagagctggaaaagggttccaag
gcagccgagaggacactggtgtaccccctggaactgcccaaggagccagccagtcccccc
ttccgtcctggcccagaaaccgatgagaaactttgggatcctgttggttactactattca
gatggctctctcaagattgtgcctggtcacgcccggtgccagcccgggggtgggccccct
tccccacctcctggcatccccggccagcccttgccttctccaactcggcttcacctagga
ggtggtcggaactcaaatgccaacggttatgtgcgcttacagttgggtggagaggaccga
gaaggatctgggcacccactgcctgagattgctgatgaattacgacggaaactgcagcag
cgccagccgctgcctgactccaacccagaggagtcttcagtatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (12)   
   UniProt (2)   
   RefSeq(pep) (10)   
DNA sequence (10)   
   RefSeq(nuc) (10)   
Protein domain (7)   
   Pfam (7)   
All databases (40)   

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