KEGG   Rattus norvegicus (rat): 301513
Entry
301513            CDS       T01003                                 
Symbol
Cnot9
Name
(RefSeq) CCR4-NOT transcription complex subunit 9
  KO
K12606  CCR4-NOT transcription complex subunit 9
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    301513 (Cnot9)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    301513 (Cnot9)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     301513 (Cnot9)
SSDB
Motif
Pfam: Rcd1
Other DBs
NCBI-GeneID: 301513
NCBI-ProteinID: NP_001009357
RGD: 1311495
Ensembl: ENSRNOG00000016034
UniProt: Q5PQL2 A6JVU9
Position
9:83533369..83558207
AA seq 299 aa
MHSLATAAPVPTALAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF
GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY
PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT
VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS
DNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQEGQVTDPRGIPLPPQ
NT seq 900 nt   +upstreamnt  +downstreamnt
atgcacagcctggcaacggcagcgcctgtgcctactgcactggcccaggtggacagagag
aagatctatcagtggatcaatgaactgtccagtcctgaaacaagggaaaatgctttgctg
gagctgagcaagaagcgagagtctgtccctgaccttgcgcccatgctgtggcattcattc
ggtactattgcagcacttttacaggaaattgtaaatatttatccatctatcaaccctcca
accttgacagcacaccaatctaacagggtttgcaatgctctagcattgctacagtgtgtg
gcctcacacccagagaccaggtcagcctttcttgcagcacacatcccactctttttgtac
ccctttttgcacacagtcagcaaaactcgtccctttgaatatcttcggctcaccagcctt
ggagttattggggccttggttaaaacagatgagcaagaagtaatcaactttttattgaca
acagaaatcatccctttgtgtttgcgcatcatggaatctggaagtgaactgtctaaaacg
gttgccacattcatcctccagaagatcctcttagatgacactggtctggcttatatatgt
cagacatatgagcgtttttcccatgttgccatgatcttgggtaaaatggtcctgcagcta
tccaaagaaccatctgcccgtctgctgaagcatgtagtaagatgttaccttcgactctca
gataatcccagggcacgtgaagcactcagacagtgcctccctgaccagctgaaggacaca
acctttgcccaggtgctaaaagatgacaccaccaccaaacgctggcttgcacaactggtg
aagaacctgcaggagggccaagtcaccgatccccggggaattcccctgccccctcagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (1)   
   Pfam (1)   
All databases (20)   

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