KEGG   Rattus norvegicus (rat): 303088
Entry
303088            CDS       T01003                                 
Symbol
Trim41
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM41
  KO
K12017  tripartite motif-containing protein 41 [EC:2.3.2.27]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rno04121]
    303088 (Trim41)
Enzymes [BR:rno01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     303088 (Trim41)
Ubiquitin system [BR:rno04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    303088 (Trim41)
SSDB
Motif
Pfam: PRY SPRY zf-C3HC4_4 zf-B_box zf-RING_UBOX zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3 zf-RING_2 Apolipoprotein zf-RING_5 DUF3631 zf-RING_6 DUF1664
Other DBs
NCBI-GeneID: 303088
NCBI-ProteinID: NP_001128209
RGD: 1308885
Ensembl: ENSRNOG00000002388
UniProt: B4F7B4
Position
10:complement(33676348..33687432)
AA seq 628 aa
MAAVAMTPNPVQTLQEEAVCAICLDYFTDPVSIGCGHNFCRVCVTQLWGGEDEEDRDELD
REEEEEVGEEEEVEAVGAGGGWDTPMRDEDYEGDMEEEAEEEEEGVFWSSGIGGSNWDNM
DYVWEEEEEEEELDYYLGDVEDLRVEDEDEEEEVLEEDEEEELDPITQLPPPPAPRRCFT
CPQCRKSFPRRSFRPNLQLANMVQVIRQMHPTPGRGSRVNEQGICPRHQEALKLFCEVDE
EAICVVCRESRSHKQHSVVPLEEVVQEYKAKLQGHVEPLRKHLEAVQKMKAKEERRVTEL
KSQMKSELAAVASEFGRLTRFLAEEQAGLERRLREMHEAQLGRAGAAANRLEEQAVQLSR
LLAEAQERSQQGGLRLLQDIKETFNRCEEIQLQPPEIWSPDPCQPHSHDFLTDAIVRKMS
RMFCQAARVDLTLDPDTAHPALLLSPDRRGVRLAERRQEVPEHSKRFSADCCVLGAQGFR
SGRHYWEVEVGGRRGWAVGAARESTHHKEKVGSGGSSVSSGDASSSRHHHRRRRLHLPQQ
LLLQREVWCVGTHGKRYQAQSSTEQTLLSPCEKPRRFGVYLDYEAGRLGFYNADTLAHVH
TFSAAFLGERVFPFFRVLSKGTRIKLCP
NT seq 1887 nt   +upstreamnt  +downstreamnt
atggctgccgttgccatgacacccaaccctgtgcagacccttcaggaggaggcggtgtgc
gccatctgcctcgattacttcacggaccccgtgtccatcggctgcgggcacaacttctgc
cgagtgtgtgtaacccagttgtggggcggggaggatgaagaagacagagatgagttggat
cgggaggaggaggaggaggtcggagaggaggaagaagtggaggctgtcggggcaggcggg
ggttgggacacccctatgcgcgatgaagattatgagggtgacatggaggaggaggccgag
gaggaagaggaaggtgtgttctggagtagtggtataggcgggtctaactgggacaacatg
gactatgtgtgggaggaggaggaggaggaggaagaactggactattacttgggggatgtg
gaggacctgagggtggaagatgaggatgaggaggaggaagtcctggaggaagacgaggaa
gaggagctggacccgatcacccaactgccaccacctccagcccctcggaggtgcttcact
tgtccccagtgtcgaaaaagttttcctcggcggagcttccgccccaacctgcagttggcc
aacatggtccaggtgattcggcagatgcatccaacccctggtcgagggagtcgtgtgaat
gaacaaggcatctgtcccagacaccaagaagccctgaagctgttctgtgaggtggatgaa
gaagccatctgtgtggtgtgccgcgaatccaggagccacaaacagcatagtgtggtgcca
ttggaggaggtagtgcaggagtacaaggccaagctacaagggcatgtggaaccacttagg
aagcatctagaggctgtgcagaagatgaaggccaaggaggagaggcgggtgacagagctg
aagagccagatgaagtcagagctggcagctgtggcctcagagtttggacggttaacacgg
tttctggctgaagagcaggcaggactagaacggcgcctccgggagatgcatgaagctcag
ttaggacgtgcaggagcagcagccaaccgccttgaagagcaggctgtccagctaagccgc
ctgcttgctgaagcccaagagcggagccaacaggggggcctgcggctattgcaagacatc
aaggagactttcaataggtgtgaagagatacagttgcagcccccagagatttggtcccct
gacccatgccaaccccatagccacgactttctgacagacgccatcgtgaggaaaatgagc
cggatgttctgtcaggctgcaagagtggacctgacactggacccagacacagctcacccg
gctctgctgctgtcccctgatcgccgtggagtccgcttggcagaacgtcggcaggaggtt
cctgaacattccaagcgcttttcagcagactgctgtgtactaggggcccagggcttccgc
tcgggccggcactactgggaggtagaggtgggtgggcggcggggctgggcagtgggtgct
gcccgtgaatcaacccatcataaagaaaaagtgggctctggggggtcctctgttagcagt
ggggatgccagctcctcacgccatcaccatcgccgccgccggctccatctgcctcagcag
ctcctgcttcagcgggaagtgtggtgcgtgggcacccacggcaaacgataccaggcgcag
agctcaacagagcagacactgctgagcccatgtgagaaaccacggcgtttcggcgtgtac
ctggactatgaggctgggcgcctgggcttctacaacgcagataccttagctcatgtacac
accttctcagctgcctttcttggcgagcgtgtttttcctttcttccgggtactttccaag
ggtacccgcatcaagctctgcccttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (16)   
   RefSeq(nuc) (2)   
   GenBank (7)   
   EMBL (7)   
Protein domain (14)   
   Pfam (14)   
All databases (44)   

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