KEGG   Rattus norvegicus (rat): 303132
Entry
303132            CDS       T01003                                 
Symbol
Aff4
Name
(RefSeq) AF4/FMR2 family member 4
  KO
K15185  AF4/FMR2 family member 4
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    303132 (Aff4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    303132 (Aff4)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     303132 (Aff4)
SSDB
Motif
Pfam: AF-4 AFF4_CHD AF4_int
Other DBs
NCBI-GeneID: 303132
NCBI-ProteinID: NP_001100471
RGD: 1311694
Ensembl: ENSRNOG00000006965
UniProt: A6HEC4
Position
10:37998319..38080580
AA seq 1150 aa
MNREDRNVLRMKERERRNQEIQQGEDAFPPSSPLFAEPYKVTSKEDKLSSRIQSMLGNYD
EMKDYIGDRSIPKLVAIPKPAVPTTTDEKANPNFFEQRHGGSHQSSKWTPVGPAPSTSQS
QKRSSGLQSGHSSQRSSAGGSGASGSGQRHDRDSYSSSRKKGQHGSEHSKSRSSSPGKPQ
AVSSLSSSHSRSHGNDHHSKEHQRSKSPRDPDANWDSPSRVPFSSGQHSSQSFPPSLMSK
SSSMLQKPTAYVRPMDGQESVEPKLSSEHYSSQSHGSNMTELKPSSKAHLTKLKIPSRPL
DASVSGDVSCVDEILKEMTHSWPPPLTAIHTPCKTEPSKFPFPTKESQQSNFGSGEQKRY
STSAKTSNGHQSKSMLKDDLKLSSSEDSDGEQDCDKTMPRSTPGSEGADNSRDDSSSHSG
SESSSGSDSESESSSSDSEANEPSQSASPEPEPPPTNKWQLDNWLNKVNPHKVSPASSVD
SNIPSSQAYKKEGREQGTASNYTDPGGAKEASSATPGRDSKTIQKGSESGRGRQKSPAQS
DSTTQRRTVGKKQPKKTEKSAAEEPRGGLKIESETPVDMATSMPSSRHKAATKGSRKPNI
KKESKSSPRPTAEKKKYKSASKSSQKSREIIETDSSSSDSDERESLPPSSQTPKYPESNR
TPVKPSSAEEDDSFFRQRMFSPMEEKELLSPLSDPDDRYPLIVKIDLNLLTRIPGKPYKE
TEPPKGEKKNVPEKHSREVQKQASEKASNKGKRKHKNDDDNRASESKKPKTEDKNSSAHK
PSSSKESSKQSSTKEKDLLPSPAGPVPSKDSKTEHGSRKRTVSQSSSLKSSSTSNKENSG
SSKSTSSTAKQKKTEGKVSSSSKEAKEKAPNSSSNCPPSTPTPDSSKPRRTKLAFDDRNY
SADHYLQEAKKLKHNADALSDRFEKAVYYLDAVVSFIECGNALEKNAQESKSPFPMYSDT
VELIKYTMKLKNYLAPDATAADKRLTVLCLRCQSLLYLRLFKLKKENALKYSKTLTEHLK
NSYSNSQAPSPGLGSKAVGMPSPVSPKLSPGNSGSYSSGGSSASASGSSVTIPQKIHQMA
ASYVQVTSNFLYATEIWDQAEQLSKEQKEFFAELDKVMGPLIFNASIMTDLARYTRQGLH
WLRQDAKLIS
NT seq 3453 nt   +upstreamnt  +downstreamnt
atgaaccgtgaagaccggaatgtgctgcgcatgaaagaaagggaaaggcggaatcaggaa
attcagcagggtgaagacgccttcccacctagttctcctctctttgctgagccgtacaaa
gttactagcaaagaagataagttatcaagtcgtattcagagtatgcttggaaactacgat
gaaatgaaggattacataggagacagatctataccaaagcttgttgcaattcccaagcct
gcagtaccgacgacaacagacgagaaagcaaacccaaatttttttgaacagagacatgga
ggatctcatcagagtagcaagtggactcctgtaggacctgcacccagcacctctcagtct
cagaagcgctcctctggcttgcagagtggacacagtagccagcggagcagtgcaggtggg
agtggcgctagtggtagtggccagaggcatgaccgtgactcctacagcagtagcaggaaa
aaaggccagcacgggtcagagcactccaaatcacgatcctcaagccctggaaaaccccag
gctgtttcttcactaagttctagtcattccaggtctcatgggaatgaccaccatagcaag
gaacatcagcgctccaaatcacctcgggaccctgatgccaactgggattctccttcccgg
gtacctttttcaagtgggcaacattcaagtcagtctttcccaccttctttgatgtcaaaa
tctagttcaatgttacagaaacccactgcctatgtacggcccatggatggacaggagtct
gtggaaccaaagctgtcctctgagcactacagcagccagtctcatggtagtaacatgact
gagctgaagcccagcagcaaagcacatcttaccaagctgaaaataccttcccgacctctg
gatgcatcagtttctggtgatgtaagctgtgtggatgaaatacttaaagagatgacgcac
tcatggcctccccctctaacggctattcatacaccatgcaaaacagaaccttccaaattt
ccttttccaactaaggagtctcagcagtctaactttggctctggagaacaaaaaagatac
agtacttctgctaaaacatcaaatggacaccagtcaaaatctatgttaaaagatgactta
aaactaagcagcagtgaagacagtgatggggaacaggattgtgataagacaatgccaagg
agtacaccaggaagtgagggagcagataactccagggatgactcaagcagccacagtggg
tctgaaagcagctctgggtccgactccgagagtgaaagcagctccagtgacagtgaggca
aatgagccatcccagagcgcatcccctgagcctgaaccaccaccaaccaacaagtggcaa
cttgataattggttgaacaaagtgaacccacataaagtgtccccagcttcctctgtagat
agcaacatcccatcgtctcaagcctacaagaaagaaggccgagagcagggcactgccagt
aactacacagatccaggtggggccaaagaagcgagctctgccactccgggacgagactct
aaaactatccaaaaaggatcagaaagtggccgtgggaggcagaagtctcctgcacagagt
gacagtaccacacagaggagaactgttggcaaaaaacaacccaaaaaaactgagaagtca
gctgctgaagagccccgaggaggcctgaagatagaaagtgagacccctgtggacatggct
accagcatgccctccagcaggcataaggcagccaccaagggctcaaggaaacctaacatc
aaaaaggagtcgaaatcttcccctcgacctacagcagagaaaaagaaatacaagtcagca
agtaaatcctcccagaaatctcgggaaatcatagaaacagatagctcctcctcagattca
gatgagagggagagcctccctccctcctcccagactcctaagtaccctgagagcaatagg
actcctgtcaaaccctcctcggcggaggaagacgatagctttttccggcagcggatgttc
tctcctatggaagagaaggagctcctttccccactcagtgaccctgatgacaggtaccca
ctcattgtgaagatagacctgaatcttttgactagaatacccgggaagccttacaaagaa
acagagccacccaagggggaaaagaaaaatgttccagaaaaacactcaagagaggtgcag
aagcaagcctcagaaaaggcttccaacaaaggcaagaggaaacacaagaatgatgatgat
aaccgagccagtgagagcaaaaaacccaagacggaggacaagaactcatcagcccacaag
ccatccagcagcaaagagtcatcgaagcagagtagtacaaaagaaaaggacttgctacct
tcacctgctgggcctgttccttcaaaagattcaaaaacagagcatggctctcggaagagg
actgtcagtcagtcatcatccttaaagtccagcagtaccagcaacaaagagaacagtggc
agcagcaagagcacttcctccacagcaaaacagaagaagactgaagggaaggtttccagc
agctccaaagaggccaaggagaaggctccaaatagctcctctaattgtcctccgtctaca
ccaactcctgattcttcgaagcctcgaagaacgaagctcgcctttgatgacagaaattat
tcagcagaccattatttacaagaagcaaaaaaactcaaacacaatgcagatgctttgtct
gataggtttgagaaagctgtgtactaccttgatgccgtagtgtctttcattgaatgtggg
aatgcattagagaagaacgctcaggaatccaagtctccattccctatgtactcagacaca
gtggagcttattaaatacactatgaaactaaagaattatttggcgccagatgctacagct
gcagacaagagactcacagtactttgcctgagatgccagtcattgttgtacctgaggctg
ttcaaactgaagaaggagaacgctctgaagtactccaagacgctgactgagcacctgaag
aattcttacagtaattctcaagcaccttcacctggcttggggagcaaagctgttgggatg
ccctcccctgtttctccaaagctgtcaccaggcaattctggaagttactcttctggggga
agtagtgcttcagcaagtggttcttcggtgaccattccacagaaaatccaccagatggca
gcaagctatgtccaggttacatctaacttcctctatgccacagaaatttgggaccaagct
gaacagctttccaaagaacaaaaagaattctttgctgaactggacaaagtgatgggccct
ctcatctttaatgcaagcatcatgacagatctggctcgttacacccggcagggactgcat
tggcttcggcaggatgccaagctgatatcttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (3)   
   Pfam (3)   
All databases (22)   

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