KEGG   Rattus norvegicus (rat): 303141
Entry
303141            CDS       T01003                                 
Symbol
Rapgef6
Name
(RefSeq) rap guanine nucleotide exchange factor 6
  KO
K08020  Rap guanine nucleotide exchange factor 6
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04015  Rap1 signaling pathway
rno04530  Tight junction
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04015 Rap1 signaling pathway
    303141 (Rapgef6)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04530 Tight junction
    303141 (Rapgef6)
SSDB
Motif
Pfam: RasGEF RA PDZ RasGEF_N cNMP_binding PDZ_6 PDZ_2
Other DBs
NCBI-GeneID: 303141
NCBI-ProteinID: NP_001100473
RGD: 1307645
Ensembl: ENSRNOG00000009995
UniProt: A6HEI1
Position
10:39156573..39324947
AA seq 1606 aa
MNSPVDPGARQALRKKPPERTPEDLNIIYSYLHGMEILSNLREHQLRLMSTRARYERYNG
NQMLFCSETIARCWYILLSGSVLVKDSMVLPPCSFGKQFGGKRGCDCLVLEPSEMIVVEN
SKDNEDSILQREIPARQSRRRFRKINYKGERQTIIDGVDVNNYLSLPADLTKMHLTDNPH
PQVTHVTSSQSGCSIASDSGSSSLSDIYQATESEVGDVDLTRLPEGPVDSEDEEEEEEEI
DRTDPLQGRDLVRECLEKEPADKTDDDVEQLLEFMHQLPAFANMTMSVRRELCSVMIFEV
VEQAGAVILEDGQELDSWYVILNGTVEISHPDGKIENLFMGNSFGIVPTLDKQHMRGVVR
TKVDDCQFVCIAQQDYWRILNHVEKNTHKVEEEGEIVMVHEHRELDRSGTRKGHIVIKAT
PERLIMHLIEEHSIVDPTYIEDFLLTYRTFLETPLDVGIKLLEWFKIDSLRDKVTRIVLL
WVNNHFNDFEGDPAMTRFLEEFEKNLEDTKMNGHLRLLNIACAAKAKWRQVVLQKASRES
PLHFSLTGGSEKGFGVFVEVVEPGTKAADAGLKRGDQIMEVNGQNFENITFAKALEILRN
NTHLALTVKTNIFVFKELLSRTEQEKSGVPHIPKIAEKKSNRHSIQDVPGDIEQVPQEKG
NKKIKANTVSGGRNKIRKILDKTRFSILPPKLFSDGGLSQSQDDSIVGTRHCRHSLAIMP
IPGTLSSSSPDLLQPTTSMLDFSNPSDIPDQVIRVFKADQQSCYIIISKDTTAKEVVCQA
VQEFGLTGASDTYSLCEVSVTPEGVIKQRRLPDQFSKLADRIQLNGRYYLKNNMETETLC
SDEDAQELLKESQLSMLQLSTIEVATQLSMRDFDLFRNIEPTEYIDDLFKLDSKTGNTHL
KQFEDIVNQETFWVATEILSESNQLKRMKIIKHFIKIALHCRECKNFNSMFAIISGLNLA
PVARLRGTWEKLPSKYEKHLQDLQDLFDPSRNMAKYRNILSSQSMQPPIIPLFPVVKKDM
TFLHEGNDSKVDGLVNFEKLRMIAKEIRHIIRMTSANMDPAMMFRQRSLSQGSTNSNMLD
VQGGAHKKRARRSSLLNAKKLYEDAQMARKVKQYLSSLDIDTEEEKFQMMSLQWEPAYGT
LTKSLTEKKSARSSEMSPVPLRSAGHTAKVHLHQPHRVSQVLQVPAVNLHPIRKKGQTRD
HVLSTNLPQKGLGPTEEVSGKKHTEDTISVASSLHSSPPASPQSSPRKGCTLTPSSKCDN
LSDSSHSEISSRSSIVSNGSVDSMSAAGQDERCSAHSLAVPEPTGAWEKTDHPSGISDHS
QLAHGWMLSKPSLIKGVAVSSSLSSEEMSQEHVVLEAADSGRGSWTSCSSSSHDNFQSLQ
NQKSWDFLNSYRHTHLGDPIAEVEPPDCEPCACPKGCSRTCSQCKGSLETNQLRQSWASS
SSLSDTWEPNYGTVKRRVLESTPAEAPDGLEPRDTSDPVYKTVTSSTDKGLIVYCVTSPK
KGDRHREPPPTPPGYLGISLADLKEGSHPHLKPPDYSVAVQRSKMMLLNSLSRLPPAPPS
SHTSAWVPSKIGSQPQRHSLQPSHPKLADVADADSEADENEQVSAV
NT seq 4821 nt   +upstreamnt  +downstreamnt
atgaactcgcccgtggaccctggcgctcggcaggcactgaggaagaagccgccggagcgg
actcctgaggacttaaatattatttattcctatctccatgggatggaaatactatcaaac
ctcagggagcatcagcttaggttaatgtctacaagagcacgctatgagagatacaatggc
aatcaaatgcttttttgttcagaaactattgccagatgttggtatatcctgctttctgga
tctgtacttgtaaaagattctatggtccttcctccttgcagttttggtaagcagtttgga
ggaaaaagaggatgtgattgtcttgtattagaaccttcagaaatgattgtggtagaaaat
tccaaagacaatgaagatagtatattacaaagagaaattcctgccagacagtctcgacga
aggtttcggaaaattaactataagggagaacgccaaaccataatcgatggggtggatgtt
aataactacctttcgcttccagcagatcttaccaagatgcacctcacggacaaccctcat
ccacaggtcactcatgtgacttctagtcagtctggctgtagcattgccagtgactctggg
agcagcagtttatccgatatctatcaggctacagagagtgaagtaggagatgtagattta
acccgtcttcctgaaggacctgttgattctgaggatgaagaggaggaggaggaagagatt
gatcgaacagatccactgcagggtcgagatcttgtccgggaatgtcttgaaaaggaacct
gcagacaaaactgatgatgatgttgagcagttacttgagttcatgcaccagctacctgcc
tttgcgaacatgaccatgtctgtaaggagagagctctgctctgtcatgatttttgaagta
gtagagcaggctggggctgttattcttgaagatgggcaagagcttgactcgtggtatgtc
attttaaatggcactgtagaaattagccatccagatgggaaaattgaaaatctcttcatg
ggaaatagttttggaatcgtgcccactctggataagcagcacatgcgtggagttgtcaga
accaaagtcgatgattgtcagtttgtctgcatagcccaacaggactattggagaatttta
aatcatgttgaaaaaaacacccataaagttgaggaagagggagaaatcgtcatggtacat
gagcaccgtgagctagaccggagtggaactagaaaaggacacatcgtgatcaaggcgaca
cctgagcgtctcatcatgcatttgatagaagagcattctattgtggacccaacttatata
gaagatttcctattaacttacagaacatttcttgaaactcctttggatgttgggatcaag
cttttagaatggtttaagattgacagcttaagggataaggtgacccggattgtactctta
tgggtaaataatcattttaatgattttgaaggtgatcctgctatgactcgatttctagaa
gaatttgaaaaaaatttggaagatacaaaaatgaacggtcacctcagattactgaacatc
gcctgtgctgcaaaggctaagtggaggcaggttgtactgcagaaggcgtcccgtgagtcc
ccgctacacttcagcctcacgggaggcagcgagaagggatttggtgtctttgtagaagta
gtggagcctggtaccaaagctgctgacgcaggactgaaacggggtgatcagataatggaa
gtcaatgggcaaaactttgagaatattacgtttgctaaagcccttgaaattttgaggaat
aatactcatcttgcacttactgtgaagaccaacatttttgtgttcaaagaattgctcagt
aggactgaacaagagaaatctggtgtccctcatattcccaaaattgctgaaaaaaaaagt
aatcgtcattctattcaagatgtcccaggggatattgagcaggtgccacaggagaaagga
aacaagaaaattaaagcaaataccgtttcaggtggaagaaataaaatcaggaaaattttg
gataaaacaagatttagtatcttgcctccaaaactatttagtgacggaggcctgagtcaa
tcacaagatgacagcattgtgggaaccaggcactgtaggcacagcctggctatcatgcca
attcctggaacactgtcatccagcagcccagatctcttacagcctaccactagcatgttg
gacttttccaatccttcagatattcctgatcaagttataagagttttcaaagcagatcaa
caaagctgctacattatcatcagtaaagataccacagctaaagaagtggtctgccaagct
gtacaggaatttggtttgactggtgcatctgacacatactctctctgtgaagtttctgtt
actcctgagggtgttataaagcagagaagacttccggaccagttctccaaattagctgat
agaattcaactcaatggaaggtattacctaaaaaataacatggagacagaaacattgtgt
tctgatgaagatgcccaggaactactgaaagaaagccagctctccatgctgcagctcagc
accatcgaggttgccacccagctgtcaatgagggactttgatttgtttcgtaacattgag
cctactgaatatattgatgatctttttaaattagattccaaaacaggaaatactcacttg
aaacagtttgaggatattgtaaaccaagagacattctgggttgccacagagattctaagt
gagtcaaaccagctgaaaagaatgaagattattaaacattttattaaaattgcccttcat
tgccgagaatgcaagaatttcaattccatgtttgcaataataagtggcttgaacctggca
ccagtagcacgactcagaggcacctgggaaaagttaccaagcaaatatgagaaacacctt
caagatctacaagacctttttgatccatctagaaacatggcaaaatacagaaatattctt
agtagtcagagcatgcagcctccaattattccactcttccctgttgtcaagaaagatatg
acattccttcatgaaggaaatgactccaaagtagatggcttagtaaacttcgagaagcta
agaatgattgccaaggaaatccgtcatattattcgaatgacttctgctaacatggaccct
gccatgatgtttcgccagaggtcattgagtcaaggcagcacaaattctaacatgctagat
gttcagggaggggctcacaaaaaaagagcacgccgcagctcactgctgaatgccaagaaa
ctgtatgaagatgcccaaatggcaaggaaagtgaaacagtatctttctagtctggacata
gacacagaggaggagaagttccagatgatgtcactgcagtgggagcctgcatatggtacc
ttgacaaagagcttaactgaaaaaaagtcagccagatcatctgagatgtctcctgtgccg
ttgaggtcagctggccacacagctaaagtccacttgcaccagccacacagagtgagccag
gtgcttcaggtgccagcagttaacttgcaccccatccggaagaaaggacaaaccagagac
catgtgctgagtacaaatttacctcagaaaggtttaggaccaactgaagaagtgagtggt
aagaaacacacagaagatactatttctgtagcgtcctctctacactctagtcctcctgca
tctcctcagagctcccctcgcaaaggttgtacactcacaccatcaagtaaatgtgacaac
ttatctgactccagccacagtgaaatctcctctcggtccagcattgtgagcaatggttct
gttgactccatgtcggcagctggacaggatgaacgctgttcggcccacagcctagcagtt
cctgagcccaccggggcatgggaaaagacagatcacccttcggggatctcagaccacagt
cagcttgctcacgggtggatgctgtcaaagccatctcttatcaagggcgtagccgtctcg
tcttctctgagcagcgaagagatgtctcaggagcatgttgtgctggaggcagctgacagt
ggtcggggcagttggacatcctgttccagcagctcccatgacaacttccagagccttcag
aatcaaaagagctgggactttctgaactcctacagacacacgcatctaggcgaccctatt
gctgaagttgagccccctgactgtgagccctgcgcctgtcctaaaggttgctcaagaact
tgtagccagtgcaaaggcagcctagagacgaaccagctgaggcagagttgggcctcatcc
agctcactgtctgacacgtgggaaccaaactacgggacagtcaagcggagggttttggaa
agtacaccagcagaggcacctgatggcttggagcccagggataccagtgaccccgtttat
aaaactgtcacttccagtacagacaagggcttgattgtgtactgtgtcacctcacccaag
aaaggtgataggcatagggagccacctcccactcctccaggatatctgggaatttcctta
gcggacctaaaggaaggatcccacccgcacctaaaacctccagactatagtgtggcagta
caaagatcaaagatgatgcttcttaacagcctgtctagactgccgccagctcctcccagt
agccacacctcggcctgggttccctcgaagatcggatcccagcctcaaaggcatagcttg
cagccgtcccatcccaaactagcagatgtggctgatgcagatagcgaagcagatgagaat
gagcaggtgtcagcagtctag

  All links  
Ontology (1)   
   KEGG BRITE (1)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (14)   
   UniProt (1)   
   RefSeq(pep) (13)   
DNA sequence (18)   
   RefSeq(nuc) (14)   
   GenBank (2)   
   EMBL (2)   
Protein domain (7)   
   Pfam (7)   
All databases (49)   

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