KEGG   Rattus norvegicus (rat): 303369
Entry
303369            CDS       T01003                                 
Symbol
Lig3
Name
(RefSeq) DNA ligase 3 isoform 1
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    303369 (Lig3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rno03400]
    303369 (Lig3)
Enzymes [BR:rno01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     303369 (Lig3)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     303369 (Lig3)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N zf-PARP DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme Synaptonemal_3
Other DBs
NCBI-GeneID: 303369
NCBI-ProteinID: NP_001380964
RGD: 1309875
Ensembl: ENSRNOG00000021815
Vega: OTTRNOG00000000454
Position
10:68215371..68238705
AA seq 1002 aa
MTLAFKTLFPRNLCALGRKELCLFSEQHHWPAIRQFSQWSETNLLCGCCLLQRRKPVLSF
QRGHLRPRATHLISWSGSHVGLCTGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRI
GKVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQISQ
HIADLSSKTAATPKKKATVQAKLTTTGQVTSPVKGASFITSTNPRKFSGFSAAKPNNSEQ
DPSSPAPKTSLSASKCDPKHKDCLLREFRKLCAMVAENPSYNTKTQIIHDFLQKGSTGDG
FRGDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFF
EQSKSFPPAAKSLLTIQEVDAFLLHLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKH
DLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNEQEVEKDPGRRRALSVQASLM
TPVQPMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKKGDHFSYFSRSLKPVLPHKV
AHFKDYIPKAFPGGQSMILDSEVLLIDNNTGKPLPFGTLGVHKKAAFQDANVCLFVFDCI
YFNDVSLMDRPLCERRKFLHDNMVEIRNRIMFSEMKQVTKASDLADMINRVIREGLEGLV
LKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDP
DSQKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKIYYPDFIVPDPKK
AAVWEITGAEFSRSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKDKADF
AVVAGDEGSSTTGGSNGENEGTAGSTVPRKGPKGPPSKSSASAKKTEQKLNDPSSRGGEK
LAVKSSPVKVGMKRKAADETPGLTKALLDVFTGVRLYLPPSTPDFRRLKRYFVAFNGDLV
QEFDMASATHVLGNRDKNTDAQLVSSEWIWACIRKRRLVAPC
NT seq 3009 nt   +upstreamnt  +downstreamnt
atgactttggcctttaagaccctcttcccgagaaacctctgtgcccttggcagaaaagaa
ctgtgcctgttttcagaacagcatcactggcctgccataagacagttcagccagtggtcg
gaaacaaatctcctttgtgggtgctgcctcctccagagaagaaagcctgtcctatctttc
cagagaggtcatctaagaccacgtgccacccaccttatttcgtggtcagggtcgcatgtg
ggactctgtactggcccctgtgagatggccgaacagcggttctgtgtggactatgccaag
cggggcacagctggctgcaagaaatgcaaggagaagattgtaaagggcgtatgccgcatt
ggcaaagtggtacccaatcccttctcagagtctgggggtgatatgaaagagtggtaccac
attaagtgcatgtttgagaaactggagcgggcgcgggccaccacaaaaaaaattgaagac
ctcacagagctggaaggctgggaagagctggaagataatgaaaaggaacagataagccag
cacattgcagacctgtcttccaagacagctgccacaccgaagaagaaagctactgtccag
gctaagctgacaaccactggccaagtgacatcaccagtgaaaggcgcttcgtttattacc
agtaccaatccccggaaattttctggcttttcagcagccaaaccgaacaactctgagcaa
gacccctcaagccctgctcctaagaccagtctgtccgcaagtaaatgtgaccctaagcac
aaagattgtctactacgagaattccggaagctgtgtgccatggtagctgaaaatcctagc
tataacaccaagacccagatcatccacgacttcttgcagaaaggctccacaggagatggc
ttccgaggcgatgtgtacctgacagtgaagctgctgctgcctggtgtcatcaagagtgtg
tacaacttgaatgataagcagatagtgaaactgttcagccgaatttttaactgcaaccca
gatgatatggcccgggacctagaacagggtgacgtgtccgagacgatcagagtcttcttt
gagcagagcaagtcttttcccccagctgccaaaagcctcctcaccatccaggaggtggat
gcatttcttctgcacctctccaagctcaccaaagaggatgagcagcagcaggccctgcag
gacattgcttccaggtgtacagccaatgaccttaagtgcattatccggctgatcaaacac
gatctgaagatgaactcgggtgcaaaacacgtgttagatgcccttgaccccaatgcttat
gaagccttcaaagcatcacgcaacctgcaggatgtggtggagcgggtccttcacaatgag
caggaggtggagaaggacccaggccggcgtcgggctctgagtgtccaggcctcattgatg
acacctgtgcaacccatgctggctgaggcctgcaagtccattgagtatgcaatgaagaag
tgtcccaatggcatgttctctgagatcaagtacgatggtgagcgagtccaggtgcataag
aagggagaccatttcagctacttcagccgcagtctcaagcctgtcttgcctcacaaggtg
gcccactttaaggactatattcccaaagcgtttcctgggggtcaaagcatgatcttggac
tctgaagtgctcctgattgataacaacacaggcaaaccactgccctttgggaccctggga
gtacacaagaaagctgctttccaggatgctaatgtctgcctgtttgtttttgattgtatc
tactttaatgatgtcagcttgatggacaggcctctctgtgagcgacggaagtttcttcat
gataacatggttgaaatccgtaaccggatcatgttctcagaaatgaagcaagtcacaaaa
gcttcagacctggctgacatgataaaccgggtgatccgagagggcctggaaggtttggtg
ctaaaggatgtgaagggtacatatgagcctggaaaacgacactggctgaaagttaagaaa
gactatttgaacgagggggccatggctgatacagctgatctggtggttcttggggccttc
tatgggcaagggagcaaaggtggaatgatgtccatcttcctcatgggctgctatgacccc
gacagccagaagtggtgcactgttacaaaatgtgctggaggccatgacgatgccacactt
gcccgcctgcagaaagagctagatatggtgaagattagcaaggatcctagcaagataccc
agctggctgaagatcaacaagatctactatcctgactttatcgtcccagacccaaagaaa
gctgctgtgtgggagatcacaggagcagaattctctcgatctgaggcgcatactgctgat
gggatctccatccgatttcctcgatgcacccgaatccgggatgacaaggactggaaatct
gccactaacctcccccaactcaaggaactgtaccagctgtccaaagacaaggcagacttc
gctgtggtggctggagatgaggggagctccactactggaggcagcaatggtgagaatgag
ggcactgctgggtctactgtgccccgcaagggccccaagggaccccccagtaagtcctct
gccagtgccaagaagactgaacagaagctgaatgatcccagtagcagaggtggagagaag
ctggctgtgaagtcttctcctgtcaaagtggggatgaagaggaaagctgctgatgagacc
ccaggcctgacaaaggcgctgttggatgtcttcactggggtgaggctctacttgccacct
tctacaccagacttcagacggctcaaacgttactttgtggcattcaacggggacctggta
caggaatttgacatggcctcagccacacatgtgctgggtaacagggacaagaacactgat
gcccagttggtctcttcagagtggatttgggcatgcatccggaaacggaggctggtagct
ccctgctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (14)   
   UniProt (1)   
   RefSeq(pep) (13)   
DNA sequence (16)   
   RefSeq(nuc) (14)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (56)   

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