KEGG   Rattus norvegicus (rat): 303378
Entry
303378            CDS       T01003                                 
Symbol
Slfn9
Name
(RefSeq) schlafen family member 13
  KO
K24459  schlafen family member 13 [EC:3.1.-.-]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:rno03016]
    303378 (Slfn9)
Transfer RNA biogenesis [BR:rno03016]
 Eukaryotic type
  tRNA degradation factors
   Other tRNA degradation factors
    303378 (Slfn9)
SSDB
Motif
Pfam: SLFN_GTPase-like SLFN_AlbA_2 SLFN-g3_helicase B3R UvrD_C_2 NB-ARC AAA_14 NACHT ResIII AAA_22 nSTAND3 DEAD Viral_helicase1 AAA_30 AAA_19 AAA_16 RNA_helicase AAA_33 AAA_24 AAA_7 AAA_17 NTPase_1 PIF1 AAA_11 Bac_DnaA
Other DBs
NCBI-GeneID: 303378
NCBI-ProteinID: NP_001013992
RGD: 1359139
Ensembl: ENSRNOG00000021412
Vega: OTTRNOG00000000463
UniProt: Q5U311
Structure
Position
10:complement(68406641..68420062)
AA seq 907 aa
MEIHPSLVVEPSYPDLIIHAGEVTLGEKDRNKMDSKKKRLEKARITEAACALLNSGGGVI
VMQMSNKSEHPVEMGLDLETSLRELIPSSDLQAFIETKQQGDLFYIFVKSWSCSPKDGST
KPRICSLSSSLYCRSLTSKLPLDSKETFEFLERKKTCVKGSLTDGKGPPAKIPRLMYQND
LESNPAFEIFQSERLEYGQRLPFSESASIEFKQFSTRRAHEYIKSVIPEYISAFANTQGG
YLLFGVDDESKRVLGCPKDNVDRDSLKAVVNEAISKLPVFHFCSSKEKVSYKTRVIDVFK
EGNLYGYLCVIKVERFCCAVFSEAPISWMADKENGVYSLNTEKWVRMMVDIGPEAASSKQ
SSLDDLSKDFECQLSLSNSPPHCRPVYSKKGLEHKGDLQKRLFQVSADCFKYTPESLWRE
LCSQHERLENLISQQMCSFSCGLLILSRSWAVDLNLEGKQGVICDALLIAENSPPTLYTI
LEEQDELGQDYCTRTAFTLKQKLVNTGGYTGRVCVMTKVLCLSSQNNIETNGNSVSLIDY
PRSYNLANIQEMEDLLQALVIVLLNFSSFLSDQLGCEILNLLTVQQYEILSKSLHKTRKL
FVHGMPGSGKTIIAMKIMEKIKNTFHCERDSILYICENQLLRDFIRAKNVCRAVTRKTFM
TPNFEVEKIQHIIVDEAQNFRTENGDWYMKAKRITQRMKTCPQIFWIFLDYFQTSHQKES
GLPDFLHQYPKEELTKVVRNADKIAEFLQKISEKIRSNPPPIIPRESLNMVCEFNWSQGV
SGTCKLLTSLGLEQMARYVAERCYFFLKNGYSAQDIAVLFSTEDEKDNNEDMFLREIRNR
TSQIDDAYHLYMFDSIRRFSGLERSIVFGIDPRTAEKSIFHNLMLCLASRARKHLYILSK
VPNPFNF
NT seq 2724 nt   +upstreamnt  +downstreamnt
atggaaattcatccctccttagtggtggaaccgtcttacccagacttgatcatccatgca
ggagaggtgacactcggagaaaaagatcgaaataaaatggactcgaagaagaagagactg
gagaaagcaagaatcacagaggctgcttgtgctctgttgaactctggaggaggagtgatt
gttatgcaaatgtccaacaagagcgagcatcctgtggagatgggactggacttggagacg
tctttaagagagcttattccatcctctgatttgcaggctttcattgagaccaagcaacaa
ggggacctgttttacatttttgttaaatcttggagctgtagccctaaagatggttccact
aagcctcgaatttgcagcctgagctcttccctgtactgtcgatctttaacttcaaagctt
cccctggattcgaaagaaacgtttgagtttctggagcgcaagaagacgtgtgtcaaaggt
agtctgactgacggcaaaggtccacctgctaaaattcccagactcatgtatcagaacgac
cttgaatcaaatcccgcttttgaaattttccaaagtgagagactcgaatatggccagcgc
ttgccgttttctgaatctgcatctatcgagtttaaacaattctctaccagacgtgcccac
gaatatataaaaagtgtaattccagagtacatttccgcatttgcaaacacccagggaggc
tatcttttatttggggtggatgatgagagtaagagagtcctgggatgcccaaaagacaat
gttgaccgcgactctttgaaagcagtggtaaatgaagcaatatccaagttgccagttttc
catttttgttcatctaaagagaaggtgtcttataagaccagagtcatagatgtgtttaaa
gaaggaaatttgtatggttatctctgtgtgatcaaagtagagaggttctgctgtgcagta
ttctcagaggctcccatttcatggatggcagacaaggagaacggtgtctacagcctgaac
actgagaaatgggttcgcatgatggtggatattggcccagaggcagcttccagcaagcaa
tcctccctcgatgacctgtctaaagattttgaatgtcagctgagtctgtccaacagccct
ccacactgcagaccagtgtattctaaaaaaggactggaacataaaggggacctgcaaaag
cgtttatttcaagtgtcagcagactgttttaagtatactcctgaatccctctggagagag
ctgtgttcccagcatgagagactagagaacttaataagccagcaaatgtgttctttctcc
tgtggtttgctgatcctctctagaagctgggctgtggacctgaacctggaagggaagcag
ggagtcatctgtgatgctctgctcattgcagagaatagccccccgacactctacaccatc
cttgaggagcaagatgagctaggtcaggactactgcacccgcactgcctttactctgaag
cagaagctggtgaacactggtggctacactgggagagtgtgtgtcatgaccaaggttctc
tgcctgagttctcagaacaatattgagaccaatgggaactcagtttctcttattgattac
ccacgctcctataaccttgcaaatatccaggaaatggaggacttgctgcaggcccttgtg
attgtcttgctcaacttcagctctttcttgagcgaccagcttggctgtgaaattttgaat
cttctcacagttcaacagtatgagatactctcaaaaagtctccacaaaaccagaaaactg
tttgtgcatggcatgccaggctcagggaagaccatcattgccatgaaaatcatggaaaag
atcaaaaacacattccactgtgaaagagatagcattctctacatctgtgaaaatcagctg
ttgagggacttcatccgggcaaaaaatgtctgccgggcagtaacccggaaaacctttatg
acacctaactttgaggtggagaagatccaacacattattgttgatgaagcccagaatttc
cgcactgagaatggggactggtatatgaaggcaaagcgtatcactcagagaatgaaaact
tgtcctcaaattttctggatctttctggactattttcagaccagtcaccagaaggagagt
ggcctcccagatttcttacaccagtatccaaaggaagagctcacaaaagtggtacgcaat
gcagataaaatagctgaatttctacaaaaaatatcagagaaaatcagaagtaaccctcca
cccatcatcccccgagagtccctgaacatggtctgtgagtttaactggtctcaaggtgta
tcaggcacctgtaagctgcttacatccttgggtttggaacagatggcgaggtatgtagca
gagaggtgttattttttcttgaaaaatggctattccgcccaagacattgcagtgcttttc
agtacagaggatgagaaggataacaatgaagatatgttcctgagagaaataaggaacaga
acatctcagatagatgatgcctatcatctttacatgtttgacagcatacgtcgattctcg
ggcctagaaagaagcattgtgtttggtattgatccccgtacagctgagaagtccattttc
cacaacctaatgctctgcctagcttccagagcgaggaaacatctgtatatcctatctaaa
gtacccaaccctttcaacttctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
3D Structure (1)   
   PDB (1)   
Protein domain (25)   
   Pfam (25)   
All databases (44)   

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