KEGG   Rattus norvegicus (rat): 303607
Entry
303607            CDS       T01003                                 
Symbol
Ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
  KO
K12835  ATP-dependent RNA helicase DDX42 [EC:5.6.2.7]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    303607 (Ddx42)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rno03041]
    303607 (Ddx42)
Enzymes [BR:rno01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     303607 (Ddx42)
Spliceosome [BR:rno03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    303607 (Ddx42)
 Complex B
    303607 (Ddx42)
 Complex C
   U2 SnRNP specific factors
    303607 (Ddx42)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII P-loop_SecA ERCC3_RAD25_C
Other DBs
NCBI-GeneID: 303607
NCBI-ProteinID: NP_001100529
RGD: 1304909
Ensembl: ENSRNOG00000009474
UniProt: D4A031 A6HK14
Position
10:91648719..91680730
AA seq 929 aa
MNWNKGGPGTKRGFGFGGFAISAGKKEEAKLPQQSHSAFGAASSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFRSKPADSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ILDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGSNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGTSTAGASGWTSAGSLNSVPTNSAQQGHNSPDNPITSSTKNIPGFNNSGNISSAPVTY
PSIGAQGVNNTASGSNSREGIGGGNGKRERYTENRGGGRHSHGDSGNRHGDGGRHGDGYR
YPESSSRHTDGHRHGETRHGGSASRHGESRGANDGRNGESRKEGFNRENRMDPKVDSSRM
DKVDSKTDKTPDGFAVPEPPKRKKSRWDS
NT seq 2790 nt   +upstreamnt  +downstreamnt
atgaattggaataaaggtggacctggaaccaagcgggggtttggctttggaggttttgcc
atcagtgctgggaagaaggaggaagccaagctgccgcagcagtcgcacagtgccttcggg
gcggccagctcttcttctggatttggaaagtctgctccaccacagcttccttctttctac
aaaattggatctaaacgggccaactttgatgaagaaaatgcttatttcgaggatgaagaa
gaagactccagcaatgtagacttaccttacattcctgctgaaaactcgcctacccgccag
cagttccgatccaagccagcagactctgacagtgacgacgaccccttagaggcattcatg
gctgaagtagaggatcaggcggctagagacatgaagagacttgaggaaaaggacaaggaa
agaaaaaacgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgatacatggcagaaaacccaactgctggggtagttcaggaggaagaggaagacaat
ctggagtatgatagtgatggaaatccaattgcaccttctaaaaagattatcgatcccctt
cctcccattgatcattcggagattgactatccaccatttgaaaaaaatttttacaatgaa
catgaggagataaccaacctcactccacagcagctaatagacctgcggcataaactcaac
cttcgggtctctggtgctgcacctcctagaccaggaagtagttttgctcattttgggttt
gatgaacaacttatgcatcagattaggaaatctgagtacacacagccaactccaatacag
tgtcagggtgtgcccgtagcactaagtggtagagacatgatcggtattgctaaaacaggc
agtgggaaaaccgcagcctttatttggcccatgttgattcacataatggatcagaaggag
ttggaaccaggtgatggaccaattgcagtgattgtgtgtcctactagggagctttgtcaa
cagatccacgccgagtgcaagcgttttgggaaagcatataatcttcgatcagtggcagta
tatggaggagggagcatgtgggagcaggccaaggcccttcaggaaggggcagagattgtt
gtgtgtaccccgggtcggctgattgatcatgtgaagaaaaaagctaccaatcttcaaaga
gtctcttaccttgtgtttgatgaagctgatcgaatgttcgacatggggtttgagtatcag
gttcggtccatagcaagtcatgtccgtcctgacagacaaactctcttattcagtgcaact
tttcggaaaaagattgaaaaattggccagagacatcttgattgatcctatccgagtggta
caaggagacatcggagaggcaaatgaagacgtaacacagattgtggagattctccattct
ggacctagtaaatggaactggctcactcggcgtctggtagagtttacttcttccgggagt
gtcctcttgtttgttaccaagaaagccaacgctgaagaactggccaataaccttaagcag
gagggtcataatcttggtctgctccatggggacatggatcagagtgaaagaaacaaggtc
attttagattttaagaaaaaagacatccccgtcctggtggccactgacgttgcagcccgt
ggtctggatattccttcaattaagacagtcattaactatgatgttgcacgagacattgat
acccatactcataggattggccgaacaggaagagctggtgagaagggtgtagcctatacc
ttactgaccccaaaggacagcaattttgctggtgaccttgtacggaacctggaaggagcc
aaccaacatgtttctaaggaactcttagatctcgcaatgcagaacgcctggtttcggaag
tcacgcttcaaaggagggaaaggcaaaaagctgaacatcggtggaggaggcttgggctat
agagagcggcctgggctgggctctgagaattcggaccgaggaagtaacaacaatgtaatg
agcaattatgaagcctacaagccctccacaggagccatgggagataggctgacagcaatg
aaagcagctttccagtcccagtataagagtcactttgttgcagccagtttaagtaatcag
aaggccggaacctctactgctggggcaagtggatggactagtgcaggaagcttaaattct
gttccaactaattcagcacagcagggccataatagtcctgacaatcccatcaccagttct
accaagaacatcccaggcttcaacaattctgggaatatcagtagtgccccagtgacctac
ccttctattggagcccaaggagtcaacaacacagcttcagggagtaacagccgtgaaggg
attgggggtggcaatgggaaaagagagagatatactgagaaccggggtggtggccgtcat
agccatggagacagtggcaatcgacatggagatggtggccgccatggagatggataccgt
tacccagaaagcagtagccgtcatacggatggccaccgacatggagagaccaggcacgga
ggaagtgcaagcagacatggagaaagccggggtgcaaatgatggcaggaatggagaaagc
aggaaagaaggctttaatcgtgaaaacaggatggaccccaaggtggacagcagcaggatg
gacaaagtggacagcaagacagataagacacctgatggctttgctgttccagagccaccc
aaacgcaagaaaagccgatgggatagttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (6)   
   UniProt (2)   
   RefSeq(pep) (4)   
DNA sequence (6)   
   RefSeq(nuc) (4)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (28)   

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