KEGG   Rattus norvegicus (rat): 303639
Entry
303639            CDS       T01003                                 
Symbol
Abca6
Name
(RefSeq) ATP-binding cassette sub-family A member 6 isoform X2
  KO
K05649  ATP-binding cassette, subfamily A (ABC1), member 6
Organism
rno  Rattus norvegicus (rat)
Pathway
rno02010  ABC transporters
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   02010 ABC transporters
    303639 (Abca6)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:rno02000]
    303639 (Abca6)
Transporters [BR:rno02000]
 ABC transporters, eukaryotic type
  ABCA (ABC1) subfamily
   ABCA5, 6, 8, 9, 10 subgroups
    303639 (Abca6)
SSDB
Motif
Pfam: ABC_tran ABC2_membrane_3 AAA_21 SMC_N RsgA_GTPase nSTAND1 AAA_29 TMEM240 UBD
Other DBs
NCBI-GeneID: 303639
NCBI-ProteinID: XP_002727881
RGD: 1308998
Ensembl: ENSRNOG00000046890
UniProt: M0R890
Position
10:complement(95642026..95711535)
AA seq 1627 aa
MGSMKELSVRQQTRVLLHKNLLKKWRMKRESLLEWSIPVVIGLYMGLFSYFKENNQVPEV
PPQDLGSIDEFNGSSIMVVYTPISNVTQQIMNKTITAPTMKGTRIVGVPSEKDLDEMLLD
HVPRAFGIVFNDTFFYKLKVYLMYGNPFLKEDLLAHCWDTYPHVFCSLTRYWKRGFVALQ
TAINAAIIEVTTKHPVMEELMSVNAFNMKTLPFISKDIFQYEIFILFCLLYFSSFIYFAS
RSVTKERKHSKEFMKVMGLQDSAFWLSWGLIYVGFIFIFSVFIAVIITSTRIIVMTGFLV
IFTLFFLYGLSVIAVTFLMAVLLQKAIITNLFVFLFNLFWGCVGFTVLHKELPSSLEWVL
SICSPFAFTSGMTKIIFLEYNLNGVVFPDPSGESYVMIAVFFILAFDGLLYLVLALYFDK
ILPCGADRRAAPLFFLNPVSCFRKRTSRNKVTERDIDPELPSDEYFEPVDPEYQGKEAIR
IRNIRKEYKGKSGKVEALKGLFFDVYESQITAVLGHGGAGKSSLLNILNGLSVPTSGLAT
VYNKNLSEMQDLKEIRKMIGVCPQHNVQFDALTVKENLTLFANIKGIVPQSVAQEVQQIL
SELDMQTIQDELAEHLSEGQKRKLTFGVAILGDPRILLLDEPTAGLDPFSRQRVWGFLKE
RRADRVILFSTQFTDEADILADRKVILSNGALKCTGSSVFLKRKWGLGYHLSLFMNETCD
SEQLTSFINHHIPGAKLKAKTKEKLVYTLPLEKTSKFPEFFSDLDKYSGQGLMNYEVSMS
TLNEVFMNLEGEPSTTQDFEKGETLTDSDSLNEMEVAPPSLSKAQKTMSAMSLWRMQVCA
IARLRVLKLRRERKAFLTFLPLLGISLIPLITEYMANALIEVKTNWEFKTDLYFLSPGQL
PQGLRTSLLVINNTESNIEDFVQSLKHQNIVLEVDDFENRNATESLSYNGAIIVSGRQKD
YRFSAVCNTKRLHCFPILMNVISNGILRMLNHTQHIRLEEDVLSSGIVVVWFGILEASLS
ILFIVCSVSPHIAMSSISDFKKKADSQLWISGLYPSAYWCGQALVDITLLSGILLTGYIT
LYTTKLMHIYLTGEIVLSIVLLAFGCAASLVFLTYVISFVFGKKRKNSGLWSICFFIVIT
IMFDTVLMDPFNEALLISAMMLVPSFSLNALLIVLEMRAYQYYREFGESKYGLSGVDLLL
CLIPYFHTLLFIFVLRCLELKYGKNVVRKDPLFRIAPQSLHVQPNPEEPVDEDEDVQAER
MRTSDALSTVNLDEKPAIIASCLHKEYTGQKKWCCSKRRKKIAVRNISFCVNKGEILGLL
GPEGAGKSSSLRMIAGIMKPTAGEVELKELSSAVAHQGEGHGAAKLGYCPQENVLWPILT
VKEHLEVYAAVKGLRKKDAVIAISRLVNAFKLHDQLNVQARNLVVGLTRKLCFALSILGN
SPVLILDEPSTGLDVSGKQQMWQAIQAAVKDNKKGVLLSTHDLAEAEALCDRAAIMVSGR
LRLIGSIQHLKRRFGKDYILELRVKEISQEPLVHKEILRLFPQAARQDRCFSLLTYKLPV
TDVHPLSQAFHKLEAVKRGFNLDDYSLSQCTLDRVFLELSKEQELGDVHEEADITMRWKL
LPPSDEL
NT seq 4884 nt   +upstreamnt  +downstreamnt
atggggagtatgaaggagttgagtgtgcgtcagcagacccgagtgcttctgcacaagaat
ctgctcaagaaatggcggatgaagagagagagcctattggagtggagcataccggttgtt
ataggactgtatatgggtctgttttcctatttcaaagaaaacaatcaggtcccggaagtc
cctcctcaggatcttggaagcatagatgaattcaatggctcttctataatggttgtatat
actccaatctctaatgtaacccaacaaataatgaacaaaaccataactgctccaactatg
aaaggaacaagaattgtcggggtaccaagtgaaaaggacttggatgaaatgcttctggat
catgtgccacgagcttttggaatcgtatttaatgacactttcttttacaagttaaaagtg
tatctaatgtatggaaatccatttctgaaagaggacctactagctcattgctgggataca
tatcctcacgttttctgttcactgaccagatactggaaaagaggatttgtggccttacaa
actgccattaacgcggccattatagaagtcacaacaaagcaccctgtgatggaggagtta
atgtccgtcaacgcgttcaatatgaagaccttaccttttatttctaaagacatttttcaa
tatgaaatttttatcttgttctgcttgctctatttctcctcgttcatctattttgcgtca
cgcagcgttactaaagagagaaagcactctaaggagttcatgaaagtaatgggtctacaa
gactctgcattctggctgtcctggggcttaatctatgttggcttcatctttattttttct
gtattcatcgccgttatcataacatctacccggatcatagtgatgactggtttcctcgtc
atatttacactgttcttcttgtatggactatccgtgatagctgtaactttcctgatggct
gttctgttacagaaagcgatcatcaccaacctatttgtatttctctttaacctcttttgg
gggtgtgtggggttcacggtgctgcacaaagagctcccctcatctctggaatgggtcctg
agcatctgtagcccttttgccttcacatccgggatgaccaagattatcttcctggagtac
aacttgaatggtgtcgtatttcctgacccttccggagaatcatatgtaatgatagcagta
tttttcatattggcttttgatggtcttctctacttggttttggccttgtattttgacaaa
atcttgccctgtggggctgatcgccgggccgctccactgtttttcttgaatccggtgtct
tgttttcgaaaaaggaccagtagaaacaaggtcactgagagagacatagaccccgagctt
ccttcggatgagtattttgagcccgtggatccagaataccaagggaaagaagccatcaga
ataagaaatattagaaaggaatataaagggaagtctgggaaagtggaggctttgaaaggc
ttgttcttcgatgtctatgagagtcaaatcacagcagttctgggccatggtggagcaggc
aaatcttcattgctaaacatcctcaatggactgtctgttccaacttcagggttagccacg
gtgtacaataaaaatctctctgagatgcaagacttgaaggaaatcagaaagatgattggt
gtttgtcctcaacataatgtgcaatttgatgcgctcactgtgaaggagaaccttaccctc
ttcgctaatataaaagggatcgttccgcagagcgtagcgcaagaggtacaacaaatcctg
tcggagttggacatgcagacgatccaggatgaactggctgaacatttaagtgaaggacag
aaaagaaagctcacctttggcgtggccattctaggagaccctcgcattttgctcttagat
gaacctactgcgggactcgatcccttctcaaggcagcgagtgtggggtttcctgaaggaa
cgcagggcggaccgcgtgatcctcttcagtacgcagttcaccgacgaggcagacatcctt
gctgacaggaaagtgatcctctccaacggggctctcaagtgtacagggtcttccgtcttc
ctgaagagaaagtggggtcttggatatcacttaagtttgttcatgaatgaaacgtgcgat
tcagagcagttaacatccttcatcaatcaccacatccccggtgctaaactaaaagcaaaa
accaaagaaaagcttgtgtacactttgccactggaaaagacaagcaagttcccagagttc
ttcagtgatctcgataaatattctggccagggcttgatgaattatgaagtctccatgtca
actctgaatgaagtcttcatgaacctggaaggagaaccaagtaccacacaggactttgag
aaaggggagaccctcacagactctgacagcttaaatgaaatggaggtggctcccccttcc
ctctctaaagcccagaagaccatgagcgctatgagcctgtggagaatgcaggtctgtgcc
atagcacggcttcgcgtcctaaaactacggcgagagaggaaagcatttctaacctttcta
ccgcttcttggaatttcattgatcccactgattacggaatacatggctaatgctttgata
gaggtaaaaaccaactgggaatttaaaacagacttgtatttcctgtctcccggacaactc
cctcagggcctgcgaaccagtctattggtcatcaataacacagagtcaaatattgaagat
ttcgtgcagtcgctgaagcatcaaaacatagttttggaagtagatgactttgagaacaga
aacgccactgagagcctttcctacaacggagccattatagtttccggaagacaaaaggac
tacagattttcagctgtgtgtaacaccaagaggctacactgctttcccatattgatgaat
gttatcagcaatggaatccttcgcatgctcaatcatacacagcacatcaggcttgaggaa
gatgtactctcatcaggcatcgtggtggtctggtttgggatactggaagcttccctgtcc
attctgtttattgtgtgcagtgtttctccacatatcgccatgagtagcatcagtgatttt
aaaaagaaagctgactcccagctgtggatttctggcctctacccttctgcctactggtgt
gggcaggcgctcgtggacattactcttctcagtggaattcttctcacgggctacatcacg
ttatacacgacaaaactgatgcacatctacttgacaggcgaaatcgtgctgtctatagtc
cttctcgcttttggctgtgcagcttctcttgtcttcttgacgtacgtgatatcatttgtt
tttggcaaaaagaggaaaaacagcggcctctggtcaatttgcttctttattgtcataacg
attatgtttgacacggttttgatggatcccttcaatgaggcactgcttatttctgccatg
atgttagttccttccttttcattgaatgcgctcctgattgtcttggaaatgagagcctac
cagtactatcgagaatttggagaaagcaaatatggtttatcgggggttgatcttctctta
tgcctaataccttacttccatactttgctgttcatttttgttctgagatgcctggaactg
aagtatgggaagaatgtagtacggaaggaccccctcttcaggatagctccgcagagtcta
catgttcagccaaacccagaggagcccgtagacgaagacgaagacgttcaagcagaaaga
atgaggacatctgatgccctgagcaccgtgaatttagatgagaaaccggccataatcgcc
agctgtctgcacaaagagtacacaggtcagaagaaatggtgttgttcaaagaggagaaag
aaaatagcagtgaggaacatctctttctgcgttaataaaggtgaaattttgggattgtta
ggacccgagggcgctggtaaaagttcctctctcaggatgatagctggcatcatgaagccg
acagctggagaggtggaactgaaagagttaagctcagctgtggctcaccagggcgagggc
catggtgcagccaagctcggatactgccctcaggagaacgtactgtggcccatcctgacc
gtgaaggaacacctggaggtgtacgccgctgtgaaggggctgaggaagaaggatgctgtc
attgccatttcaagattagtgaatgctttcaaactacacgaccagctgaatgtccaagcg
cggaacctagttgtggggttgactagaaagctgtgcttcgcgctgagcatcctgggaaac
tcacctgtcctgattctggatgaaccatctacaggcttagatgtgtcagggaagcaacaa
atgtggcaggcaatccaggcagccgttaaagacaacaagaagggtgtcctcttgtctacc
catgacctggctgaggcagaggctctgtgtgaccgagcggccatcatggtgtctggaagg
ctgagactcatcggttcaatccaacacctcaagaggagatttggcaaggattacattcta
gaactcagagtgaaggaaatttctcaagagccattagttcacaaggagattctgaggctg
ttcccccaggctgcacgccaggacaggtgcttctccttgctcacctacaagcttcccgtg
acagatgttcatcctctgtctcaggcctttcacaaactggaagcagtgaagcgtggcttt
aacctggacgactacagcctctctcagtgcacattggacagagtatttttagagctttcg
aaggaacaggagctgggagatgttcatgaagaagctgatataaccatgagatggaaactc
ctccctccctcagatgaactgtaa

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