KEGG   Rattus norvegicus (rat): 303774
Entry
303774            CDS       T01003                                 
Symbol
Tnrc6c
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X4
  KO
K18412  trinucleotide repeat-containing gene 6 protein
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    303774 (Tnrc6c)
   03036 Chromosome and associated proteins [BR:rno03036]
    303774 (Tnrc6c)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     303774 (Tnrc6c)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    303774 (Tnrc6c)
SSDB
Motif
Pfam: TNRC6-PABC_bdg M_domain Ago_hook RRM_1 UBA RRM_occluded DUF4718
Other DBs
NCBI-GeneID: 303774
NCBI-ProteinID: XP_017453243
RGD: 1310027
Ensembl: ENSRNOG00000022395
Position
10:103367498..103478246
AA seq 1901 aa
MEEKKKKKQEDKKKKEGAQKKAADQKTKVPELTKTCSSQPQPAGTSPSTSTSTISSGSNG
KRASACGQQPAASRYLPREVPPRFRQQEQKQLLKRGQPLPTGSLTSVSPAQAAGPAGASP
PPLPGAGAQQHPSKLQPDLGHSGLAGHYENCHWGQHPSYRSEADCSWDKVIIDRTDQELW
PSTPVTETESASECPTDTDSASNCGSENSSMATGSTQSSFPGHPKKTNGSHGTNGTLVQS
PSNPSALGAGAANGNGGMARVWGVATGSSSGLAHCSVGGGDGKMDNMIGDGRSQNCWGAS
NSNAGINLSLNPNANPAAWPVLGHEGTVATGNPSSICSPVSAIGQSMGSQNGNPVGTLGA
WGNLLPQESTEPQTSTSQNVSFSVQPQNLNTDGPNNTNPLNNSSPNPINAMQTNGLPNWG
MAVGMGAIIPPHLQGLPGANGSSVSQGSGSGGEGMGSSVWGLSPGNPATGSTNCGFSQGN
GGDTVNSALSAKQNGSSSAAQKEGNGGNAWDSGPPAGPGILAWGRGNGNGIGNIHSGAWG
HPSRSSSNGVNGEWAKPPNQHSSSDINGKGSTGWDSASAASQTPALQPGSEHMNSWAKAT
SSGTTASEGSSEGSGSHNEGSTGREGAGEGRRRDKGVLDQGHIQLPRNDLDPRVLSNSGW
GQTPVKQNTAWEFEESPRSERKNDNGTEAWGSVATQPSNSGGKTDGSIMNSTNTSSVSGW
VSSPPAAVPANTSWGDSNNKAPSGPGVWGDSISSTAVNNAAATKSGHAWSGTVNQEDKSP
TWGEPQKPKSQNWGDGQRANPAWSAGAGDWADSPSVLGHLGDGKKSGSGWDADGSRSGSG
WNDATRCGTSGWASGTNAKVNPGTNWGESLKPGPQQNWAHKPQDNNVSNWGGAASVKQTG
TGWIGGPLPVKQKDSSEATGWEEPSPPSIRRKMEVDDGTSAWGDPSTYNNKTVNMWDRNN
PVIQSSTTAPATPTTPTLSSTTHRAETPPSHQAGTQLNRSPLLGPVSSGWGEMPNVHSKA
ENSWGEPSSPSTLVDNGTAAWGKPPSSGSGWDHPAEPVVPFGRASAPAAATALCKPASKS
MQEGWGSGADEMNLGTSQWEDEDGDMWNNAASQESSSSCSSWGNASKKGLQKGMKTPGKQ
DEAWIMSRLIKQLTDMGFPREPAEEALKSNSMNLDQAMSALLEKKVDMDKRGLGMTDYNG
MVTKPLGCRPPISKESSMDRPTFLDKLTLSFSNQDGGLVEEPTTSPFLPSPSLKLPLSNS
ALPNQALGGIASGLGMQNLNSSRQIPSGNLGVFGNSGAAQARTMQQPPVQPLNSSQPSLR
AQVPQFLSPQVQAQLLQFAAKNIGLSPALLTSPINPQHMTMLNQLYQLQLAYQRLQIQQQ
MLQAQRNVSGPMRQQEQQVARTITNLQQQIQQHQRQLAQALLVKQPPPPPPPPHLSLHPS
AGKPGMDSFPPHPQAPGLPDLQTKEQQSSPNTFAPYPLAGLNPNMNVNSIDMSSGLSVKD
PSQSQSRLPQWTHPNSMGNLSSAASPLDQNPSKHGAIPGGLSIGPPGKSSIDDSYGRYDL
IQNSESPASPPVAVPHSWSRAKSDSDKISNGSSISWPPEFHPGVPWKGLQNIDPENDPDV
TPGSVPTGPTINTTIQDVNRYLLKSGGKLSDIKSTWSSGPASHTQASLSHELWKVPRNTT
APTRPPPGLANPKPSSTWGTSPLGWTSSYSSGSAWSTDTSGRTSSWLVLRNLTPQIDGST
LRTLCLQHGPLITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEV
NRFLAQGQALPPTSSWQSSSGGSQPRLGTSGSTHGLVRSDTAHWNTPCLSGKGSSELLWG
GVPQYSSSLWGPPSADDTRVIGSPTPLNTLLPGDLLSGESI
NT seq 5706 nt   +upstreamnt  +downstreamnt
atggaagaaaagaaaaagaaaaagcaggaagacaagaaaaagaaggaaggtgctcagaaa
aaggctgctgatcaaaaaaccaaagtgccagaacttactaagacctgttcaagccagccc
caacctgcgggtaccagtcccagtacttccaccagcactatttctagcggcagcaatggc
aaacgtgcatctgcctgtggccagcagccagctgcatcccgttacctgcctcgggaggtg
cctccacgctttcgccagcaagaacagaagcagctgttaaagagaggccagccattgccc
acagggagtctgaccagtgtgagcccagcacaggctgctggacctgcaggggccagccct
cctcccctccctggagctggggcacagcaacatcccagcaaactccaaccagatcttggt
cacagtggattggcaggtcactatgaaaattgtcactggggacagcatccctcttacaga
agtgaagcagactgcagctgggataaagtgataatagacaggactgaccaagagctgtgg
ccgtccaccccagtaacagagactgaatctgcctcagaatgtcctaccgacactgactct
gcctccaactgtggctccgagaacagtagcatggctacagggagcacccagagcagcttc
cccggccacccgaagaagacgaatggcagtcatggcaccaatggcacactcgtccaaagc
ccttctaacccgagtgcccttggggcaggagcagccaatgggaatgggggcatggccaga
gtgtggggtgtagccaccggctccagctctggcctggctcactgctctgttggtggtgga
gatgggaaaatggacaacatgattggagatgggagaagtcagaattgctggggtgcttcc
aactccaatgcgggcattaatctcagcctcaatcctaatgccaacccagctgcctggcct
gtacttgggcatgaaggaactgtggcaacaggcaacccttccagtatttgcagtccagtc
agtgccataggtcagagtatgggcagccagaatgggaacccagtgggcaccctgggtgcc
tggggaaacttgctgccccaagagagcacagaaccacaaacgtccacttctcagaatgtg
tctttcagcgtacaacctcagaaccttaacactgatggaccaaataacactaaccccttg
aataactcttcaccaaaccctatcaatgcaatgcagacaaacggactgccaaactggggc
atggctgttggtatgggggccatcatcccaccccacctgcaaggccttcctggtgctaac
ggatcatcagtctctcaaggcagtgggagtggtggggaaggaatgggcagttctgtgtgg
ggactgtcccctggcaaccctgccacaggaagtaccaattgtgggttcagtcaggggaat
ggaggagacactgtgaactcagcattaagtgctaagcagaatggatccagcagtgctgcg
cagaaggaggggaatggagggaacgcctgggactcggggcctcctgcagggcctggcatc
ctggcctggggaaggggcaatggcaacggcattgggaatatccattcgggagcttggggc
caccccagccgaagttcttctaatggtgtgaatggggagtgggcgaagcccccaaaccag
cattccagtagtgacatcaatgggaaaggatcaacagggtgggacagtgccagtgctgcc
agccagacccctgccctgcagcctggcagtgaacacatgaactcatgggccaaagccaca
tcttctggaactacagcaagtgaaggaagcagtgaggggtccggcagtcacaatgaagga
agcactgggagggaaggagcaggagagggccggaggcgagacaaaggggttctagaccaa
gggcacatccagttgccaaggaatgatcttgacccaagagttctgtctaatagtggttgg
ggacagactcccgtaaagcaaaacactgcctgggaatttgaagagtcccctaggtctgaa
aggaaaaatgacaatgggacagaggcctggggtagtgtagctactcagccttcaaactca
ggggggaagactgatgggtccatcatgaacagtacaaatacctcttcagtatcggggtgg
gtcagctcgccacctgccgccgtgccagcaaacacaagctggggagacagcaacaacaaa
gcgccaagtggcccaggagtttggggggactcaataagctctactgctgttaacaatgct
gctgccaccaagagtggccatgcttggagtgggactgtaaaccaagaggacaagtcaccc
acctggggtgagcctcagaaacccaaatcccaaaactggggcgatggacaaagagcaaac
ccagcctggagtgcaggagcaggagactgggcagactcaccatctgtccttggacatcta
ggggatggaaagaaaagtggatctggatgggatgctgatggtagtaggtcagggtctggt
tggaatgatgccacgaggtgtgggaccagtggctgggccagtggcaccaatgctaaggtg
aatccaggtacaaactggggggagtctctcaagcctggtccccagcagaactgggctcac
aagccccaagacaacaatgtgagtaactgggggggagctgcttctgttaagcagacaggg
acggggtggattggggggccactgccagtcaagcagaaggacagcagtgaggcgactggc
tgggaggagccttccccaccctccatccgacgcaaaatggaagttgatgatggtacctca
gcttggggggacccaagcacctacaacaataaaactgtaaacatgtgggacagaaacaat
ccagtcatccagagcagtaccacagcccctgccacccccacgacccccaccttgagcagc
accacacaccgggccgagacgccgccttcacaccaggctggcactcagctgaatcggtca
ccactgctcgggccagtttcgtctggctggggagagatgcccaatgttcactccaaggct
gagaactcctggggagagccatcttccccttctaccctggtcgacaatggcacggcagcc
tgggggaagcctcccagtagtggcagtggatgggatcatcctgctgagcccgtggtgcca
tttggaagagccagtgctcctgctgctgccacagccctgtgcaaaccagcttccaaatct
atgcaagaaggctggggcagtggtgcggacgaaatgaacctgggcaccagccagtgggag
gacgaggacggggacatgtggaacaatgctgcctcccaagaaagcagctcatcctgcagc
tcctggggcaatgcctcaaaaaaaggacttcagaagggcatgaagacgcccggcaagcag
gatgaggcctggatcatgagccggctgatcaaacaactcacagacatgggcttcccgaga
gagccagctgaagaggccttgaagagcaacagtatgaaccttgaccaggccatgagtgct
ctgctggaaaagaaggtggacatggacaaacgtggactgggaatgaccgactacaatgga
atggtcaccaaacccctcggctgccgcccaccaatctccaaagagtcttccatggaccgc
cccaccttccttgacaagctcaccctttctttctccaatcaggatggcggcctcgtggaa
gagcccacgacttcaccgtttttgccttccccaagcctgaagctccccctttccaacagt
gcactccccaatcaggccctgggtgggattgcctcagggctgggcatgcaaaacttgaac
tcttctagacagatcccgagtggcaatctgggtgtgtttggcaatagcggagcagcacaa
gccaggaccatgcagcagccgccagtgcagcctcttaattcctcccagcccagcctccga
gctcaagtgcctcagtttctatcccctcaggttcaagcacagcttttgcagtttgcagca
aaaaacattggtctcagccctgcactattaacctcgccaattaaccctcagcatatgacg
atgttgaaccagctctatcagctgcagctggcataccaacgtttacaaatccagcagcag
atgttacaggcccagcggaatgtttccggacccatgaggcaacaggagcagcaagttgcg
cgcacaatcactaatctgcagcagcagatccagcagcaccagcgccagctggcccaggcc
ctgcttgtaaagcagcctccacctccgccacccccgccgcacctgtctctgcacccctct
gcaggcaaaccgggcatggatagcttccctcctcacccccaggctcctggcctccccgac
ctgcagaccaaagagcagcagtcttcacccaacacctttgctccttatcctcttgccgga
ttgaacccaaacatgaatgtcaacagcatagacatgagcagtggtttgtctgtgaaggac
ccatctcagtcccagtcacgcctgcctcagtggacacatcccaattccatgggtaacttg
tctagtgctgcttctcccctggaccagaatcctagcaagcatggtgctatccctggaggt
ctaagcatcgggcctccaggtaagtcctctattgatgactcttacggccggtacgattta
attcagaacagtgagtcaccagccagtcctccagtagctgttccccatagctggtcacgt
gccaagtctgacagtgataaaatctcaaatggctccagcatcagctggcccccagagttc
caccccggggtcccatggaaaggacttcagaacatcgatcctgagaatgaccctgatgtc
actcctggaagtgtccctactggacccaccattaacaccaccatccaggatgtcaaccgc
tacctcctcaagagtggaggtaagctgtccgatattaaatcaacgtggtcctcaggccca
gcttctcacacgcaagcctctctgtctcatgagctgtggaaggtacccagaaacactact
gcacccaccaggccacctccaggcttagccaatcccaagccttcctctacctggggcacc
agccccctcggctggaccagctcctactcctcgggttctgcatggagtactgacacctca
ggaagaacaagcagctggctcgttctgcgcaatctcacaccccagatcgatggttctaca
ctgcggacgctgtgtttgcagcatgggcctctcatcacattccacctgaacctgacccaa
ggcaatgctgtggtccgctacagttccaaggaggaagccgccaaggcccagaagtctctg
cacatgtgtgtactgggaaacaccaccatcttggctgagtttgctggtgaagaagaagtg
aaccggttcctggcccaaggccaagccctcccacccacctccagctggcagtccagcagt
gggggcagccagcccaggctgggcacctcgggcagcacccatggcctagtgcgcagcgac
actgcccactggaacaccccatgcctgagtggcaaaggcagcagtgagctgctgtggggt
ggggtcccccagtactcgagcagcctgtggggcccacccagtgctgatgataccagagtg
atcggcagccccacgcctctcaacactctgctgcctggtgacctgctcagcggcgagtcc
atctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (16)   
   UniProt (1)   
   RefSeq(pep) (15)   
DNA sequence (17)   
   RefSeq(nuc) (15)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (50)   

Download RDF
DBGET integrated database retrieval system