KEGG   Rattus norvegicus (rat): 304277
Entry
304277            CDS       T01003                                 
Symbol
Cpsf4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4 isoform 1
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03015  mRNA surveillance pathway
rno05164  Influenza A
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    304277 (Cpsf4)
 09160 Human Diseases
  09172 Infectious disease: viral
   05164 Influenza A
    304277 (Cpsf4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    304277 (Cpsf4)
   03019 Messenger RNA biogenesis [BR:rno03019]
    304277 (Cpsf4)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     304277 (Cpsf4)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     304277 (Cpsf4)
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 Torus zf-CCCH_2 zf-CCCH_3 zf-CCHC zf-CCCH_4 zf-C3H1 zf-CCHC_3
Other DBs
NCBI-GeneID: 304277
NCBI-ProteinID: NP_001012351
RGD: 620440
Ensembl: ENSRNOG00000000985
Vega: OTTRNOG00000000688
UniProt: Q5FVR7
Position
12:complement(14543536..14559350)
AA seq 243 aa
MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGTTEQPP
LPQQTQPPTKRAPQVIGVMQSQNSSAGNRGPRPLEQVTCYKCGEKGHYANRCTKGHLAFL
SGQ
NT seq 732 nt   +upstreamnt  +downstreamnt
atgcaggaaataatcgccagcgtggatcacatcaagttcgacttggaaatcgccgtggag
cagcagctcggggcgcagccgctgcccttccccggcatggataagtcgggggctgctgtc
tgtgaattctttttgaaagcggcctgtggcaaagggggcatgtgcccattccgccacatt
agtggcgagaagacagttgtgtgcaaacactggctgagaggactgtgcaagaaaggggac
cagtgtgagttcttgcacgaatacgacatgaccaagatgccagagtgctacttttactcc
aagttcggggagtgcagcaacaaggagtgccccttcctgcacatcgaccctgaatccaag
ataaaggactgcccttggtatgaccgtggcttctgtaagcatggtcccctttgcaggcat
cggcacacccggagagtcatttgtgtgaactaccttgttggattctgccctgagggacca
tcatgtaaattcatgcaccctcgatttgaactgcccatgggaaccactgaacaaccccca
ctaccacagcagacacagcctccaacaaagagagccccgcaggtcattggggtcatgcag
agtcaaaacagcagtgcaggcaaccggggaccccggccgctggagcaagtcacttgctac
aagtgtggtgaaaaaggacactacgccaacagatgcaccaaagggcacttggcctttctc
agtggacagtga

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