KEGG   Rattus norvegicus (rat): 304278
Entry
304278            CDS       T01003                                 
Symbol
Ptcd1
Name
(RefSeq) pentatricopeptide repeat-containing protein 1, mitochondrial
  KO
K17710  pentatricopeptide repeat domain-containing protein 1
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:rno03016]
    304278 (Ptcd1)
   03029 Mitochondrial biogenesis [BR:rno03029]
    304278 (Ptcd1)
Transfer RNA biogenesis [BR:rno03016]
 Eukaryotic type
  3'processing and CCA adding factors
   3'processing factors
    304278 (Ptcd1)
Mitochondrial biogenesis [BR:rno03029]
 Mitochondrial DNA transcription, translation, and replication factors
  Mitochondrial transcription and translation factors
   Other mitochondrial DNA transcription and translation factors
    304278 (Ptcd1)
SSDB
Motif
Pfam: PPR_2 PPR_3 PPR_long PPR PPR_1 MNE1
Other DBs
NCBI-GeneID: 304278
NCBI-ProteinID: NP_001388048
RGD: 1311473
Ensembl: ENSRNOG00000000987
Vega: OTTRNOG00000000689
Position
12:14559419..14577198
AA seq 686 aa
MDLLRLSRLFSGPHPIGLSVLQRLDLLRSTQWTGGREGPAWLRAASCSSSSHQKRMSSLC
SDSSTPVAPQEEEEEESFGTLSEKFSSRRIFHKSTAQLYNLKLKEQGVEEEELEPRLRQG
GRNTPYWYFLQCKRLLKEGKLAEALDLFERQMLKEERLQPLECNYTVLIGGCGRVGYLKK
AFRLFNDMKKRDLEPSDATYTALFNVCAESPWKDSALQSALKLRQQLQAQNFQLNLKTYH
ALLKVAAKCADLRVCLEVFKEIIQKGHAVTEETFCFLLMGCIQDKKTGFRQAMQVWRQML
SLGIKPSRHGYNLLLGAARDCGLGDPEVASRLLLTSQEETILLQPPTGRRLAGGKVQAKT
RHGVSVKHVEALERQLFLEPSHKLEGPPAFPEARETSRTQPEVETKAEPGHMGALAPLAL
KPPDLELQVNLLSLGALSPAVVSFGTVATPADRLALMGGLEGFLGKMAEHRLQPDIKTLT
LLAEVVEPGSPAESSLLSILDRHRVEADITFFNTLIRKKSKLGDLEGAKALLPILAKKGI
VPNLRTFCNLAIGCHRPRDGMQLLADMKKSQVTPNTHIYSTLINAALKKLDYTYLISILK
DMRRNSVPVNEVVIRQLEFAAQYPPTFDRYKEKNTYLEKIDGFRAYYKQWLKVMPAEEPP
HPWQEFRDKPVRNQVITENAGGLRDG
NT seq 2061 nt   +upstreamnt  +downstreamnt
atggacctcctaagactctcccggctcttttctggcccccaccccataggactgtctgtc
cttcaacgcctggatcttctccgatctacccaatggacaggaggcagggagggacctgca
tggctgagggctgcctcctgcagttcttcctcccaccagaagagaatgagcagcctctgc
tctgactccagtactcctgtggcgcctcaggaggaggaagaagaagagagctttgggacc
ctctctgagaaattctcctcccggagaatattccacaaatcaacagcccagctctataac
ctgaaactcaaggagcaaggtgttgaggaggaagaactggagcccagactacggcagggc
gggaggaacactccatactggtacttccttcagtgcaaacgtctgctcaaggaaggaaag
cttgcagaggccctggatctgtttgagaggcagatgctgaaggaagagcgtttgcagcct
ctggagtgcaactacacggtgctgatcgggggctgcgggcgtgtcgggtacctgaaaaag
gccttcaggctcttcaatgatatgaagaagagagacctggagccctcagatgccacatac
acagccctgttcaatgtctgtgcggagtcgccctggaaggactctgccctgcagagtgca
ctgaagctccgacagcagctccaggcccaaaacttccagctcaacctgaagacatatcac
gccctgctgaaggtggcagccaagtgtgcagacctcagggtgtgcctggaagtcttcaag
gaaatcatccaaaaggggcatgcagtcacagaggagaccttctgttttctgctcatgggc
tgcatccaggacaagaagacaggcttccggcaagcaatgcaggtgtggcggcagatgctg
agtctggggatcaaaccaagtaggcatggctacaacctcctgctgggggcagctcgagac
tgtggtctgggggacccagaggttgcctccaggctgctcctgacgtcccaggaagagacc
atcctgctccagcccccaacaggcaggcgtctggcaggagggaaagtccaggccaagaca
aggcatggtgtgtcagtcaaacatgtggaagcactcgagaggcagctgtttctggaacct
tctcacaaactcgaggggccaccagcctttcctgaggccagggaaacaagcaggacccag
cctgaggtagaaaccaaggcagaacctggccacatgggagccctcgccccactggccctg
aagcctcccgacttggagctgcaagtcaatctcctaagtcttggggctctgtctcctgct
gtggtctcctttgggacagtggccacacctgctgataggctggctttgatggggggcctg
gaaggcttcctgggcaagatggcagagcacaggctccagccagacatcaaaacccttact
ctgctggctgaggtggtggaaccggggagccccgcagagtcctcactgctgtccatcctg
gacaggcatagggtggaggctgacataaccttcttcaacacactgataaggaagaagagc
aagctgggagacctggagggagccaaggcactgttgccaattctggcaaagaagggaatt
gtccccaatctgcggactttctgcaatctggccattgggtgccatcgacccagggatggt
atgcagctgcttgcagacatgaagaagtcccaggtgaccccgaacacccacatctacagc
acccttatcaacgcagccctcaagaagctggactacacctacctcatcagcatcctgaag
gacatgagacggaacagcgtcccggtgaacgaagtggtcatccgccagctggagtttgca
gcccagtaccctcccacctttgacaggtacaaagaaaaaaacacctacttggagaagatt
gatggctttcgggcttattacaagcagtggctgaaagtgatgccagcagaggagcccccc
cacccctggcaggagttccgggacaagcctgtccggaaccaagtcatcactgagaatgct
ggaggcctcagggatggatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (7)   
   UniProt (2)   
   RefSeq(pep) (5)   
DNA sequence (8)   
   RefSeq(nuc) (6)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (32)   

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